ExperimentSetReplicate

ExperimentSet4DNESQZYEJ8N
released
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ATAC-seq on F121-6 cells

   July 26th, 2018 at 3:56pm
Source Publication
Allele-specific control of replication timing and genome organization during development.
Rivera-Mulia JC, Dimond A, et al., Genome research 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F121-6-CASTx129
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXBTUHDKP
Bio Rep 1, Tec Rep 1
ATAC-seq on F121-6-CASTx129
File
Read Positions (bed)
4DNFIJPI6BAE
20.11%
0.92
0.92
32m
Experiment
4DNEX9NQ11PC
Bio Rep 2, Tec Rep 1
ATAC-seq on F121-6-CASTx129
File
Read Positions (bed)
4DNFIKGC5QIS
41.75%
0.91
0.92
18.9m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESQZYEJ8N
Multiple Experiments
File
Peaks (bigbed)
4DNFIR36ZKA8
231.76k
1.04
1.29
0.22