ExperimentSetReplicate

ExperimentSet4DNESQZYEJ8N
released
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ATAC-seq on F121-6 cells

   July 26th, 2018 at 3:56pm
Source Publication
Allele-specific control of replication timing and genome organization during development.
Rivera-Mulia JC, Dimond A, et al., Genome research 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F121-6-CASTx129
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXBTUHDKP
Bio Rep 1, Tec Rep 1
ATAC-seq on F121-6-CASTx129
File
Read Positions (bed)
4DNFIJPI6BAE
20.11%
0.92
0.92
32m
Experiment
4DNEX9NQ11PC
Bio Rep 2, Tec Rep 1
ATAC-seq on F121-6-CASTx129
File
Read Positions (bed)
4DNFIKGC5QIS
41.75%
0.91
0.92
18.9m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESQZYEJ8N
Multiple Experiments
File
Peaks (bigbed)
4DNFIR36ZKA8
231.76k
1.04
1.29
0.22