ExperimentSetReplicate

ExperimentSet4DNESR34WY74
released
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DNA Paint on HFF Htert cells with 3 loci

   August 13th, 2018 at 4:06pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:96067992-96226766 region, GRCh38:1:118815746-118989848 region, GRCh38:1:105256970-105427280 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:96067992-96226766 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:118815746-118989848 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:105256970-105427280 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESR34WY74
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXNXUQYLQ
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFIIO66M26
loci distances (txt)
110.77 kB
Experiment
4DNEX3G5YQ7O
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIDYGJ2EF
loci distances (txt)
120.85 kB
Experiment
4DNEX11JSPYO
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFIX8D6K6G
loci distances (txt)
111.31 kB
Experiment
4DNEXSMHV8PG
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFINRCY9KV
loci distances (txt)
102.61 kB
Experiment
4DNEXAGMM7HH
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIDBFACKC
loci distances (txt)
110 kB
Experiment
4DNEXWGYY82N
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIR4R3STQ
loci distances (txt)
106.16 kB