ExperimentSetReplicate

ExperimentSet4DNESRE7AK5U
released
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HiC from globose basal cells

   March 19th, 2018 at 8:04pm
Source Publication
LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Monahan K, Horta A, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
globose cell of olfactory epithelium
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESRE7AK5U
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWAA9Q8H
295.68m
59.857%
20.776%
19.367%
Experiment
4DNEXCDN8ONW
Bio Rep 1, Tec Rep 1
in situ Hi-C on globose cell of olfactory epithelium with DpnII
File
Contact List-replicate (pairs)
4DNFI4PDERVK
295.68m
59.857%
20.776%
19.367%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESRE7AK5U
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI1TBYKV3
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXCDN8ONW
Bio Rep 1, Tec Rep 1
in situ Hi-C on globose cell of olfactory epithelium with DpnII
File
Alignments (bam)
4DNFI9M6KWE2
546.37m
14.396%
20.687%
3.97%
6.829%
0.079%