ExperimentSetReplicate

ExperimentSet4DNESRIVHLUJ
released
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ATAC-seq on HEK293 cells - 1h after light Cas9-AluGG pcRNA (light-deactivatable CRISPR)

   February 14th, 2022 at 3:09am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR reveal new insights on Cas9 activity and DNA damage responses at endogenous sites
Zou RS, Marin-Gonzalez A, et al., bioRxiv 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
  1. Transient Transfection
  2. Light
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX8SG7PVA
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIBXM1SZU
7.05%
0.94
0.95
52.37m
Experiment
4DNEXABQPDBS
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIRA9IK9P
11.94%
0.93
0.94
61.42m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESRIVHLUJ
Multiple Experiments
File
Peaks (bigbed)
4DNFIDL1QBTI
211.83k
1.01
1.07
0.28