ExperimentSetReplicate

ExperimentSet4DNESRTUDA91
released
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Micro-C on HeLa-S3 (mitotic) with 1% Formaldehyde and 3mM DSG crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: MNase

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESRTUDA91
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIHTWQLL7
249.85m
53.835%
39.517%
6.648%
Experiment
4DNEXXV9HQZQ
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Contact List-replicate (pairs)
4DNFIASKG5ZK
249.85m
53.835%
39.517%
6.648%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESRTUDA91
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3VRUO3V
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXXV9HQZQ
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Alignments (bam)
4DNFICCA2U17
373.02m
3.162%
21.326%
8.525%
0.006%
0.103%