{"lab": {"status": "current", "@type": ["Lab", "Item"], "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "@id": "/labs/steve-henikoff-lab/", "display_title": "Steve Henikoff, FREDHUTCH", "correspondence": [{"contact_email": "c3RldmVoQGZoY3JjLm9yZw==", "@id": "/users/bed386a9-7ee0-4ac0-ab50-741018edf928/", "display_title": "Steve Henikoff"}], "title": "Steve Henikoff, FREDHUTCH", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "award": {"project": "4DN", "status": "current", "@id": "/awards/TCPA-2017-04/", "name": "TCPA-2017-04", "display_title": "TETHERED NUCLEASE STRATEGIES FOR IN SITU MAPPING OF 3D NUCLEAR ORGANIZATION", "center_title": "TCPA - Henikoff", "@type": ["Award", "Item"], "description": "TCPA: The 4D Nucleome project focuses on describing the 3D organization within the nucleus, with \nthe ultimate goal of understanding this organization in mechanistic terms. Our project uses novel methods for epigenomic profiling that detect 3D contact sites without cross-linking and with much higher resolution than current technologies. We recently introduced a novel strategy for chromatin profiling called CUT&RUN (Cleavage Under Targets & Release Using Nuclease), in which antibody-targeted controlled cleavage by micrococcal nuclease releases specific protein-DNA complexes into the supernatant for paired-end DNA sequencing. The method yields precise transcription factor (TF) profiles, yet is simple to perform and is inherently robust, with extremely low backgrounds requiring ~1/10 th the sequencing depth of chromatin immunoprecipitation (ChIP). CUT&RUN binding and cleavage occurs in situ, allowing for both quantitative high-resolution chromatin mapping and probing of the 3D chromatin environment. Together with our new native ChIP-seq protocol, we distinguish direct \u201canchor\u201d sites of a \nchromatin-bound protein from contacting sites without fixation, a kind of inference has not been possible with current methods of interrogating 3D chromatin architecture. We have two Aims: First, we will annotate the genome at high density for CTCF and cohesin sites, distinguishing between anchor and contact sites in 4D Nucleome cell lines. Second, we will continue development of a new replacement technology for 3D contact mapping, using CUT&RUN as a \u201cfront-end\u201d for proximity ligation (CUT&PASTE \u2013 Cleave Under Targets & Polish And Splice Touching Ends), building on our novel sci-HiC protocol for high-resolution TF-specific 3D interaction mapping. By annotating more contact sites in genomes and assigning the directionality of contacts, we move towards a mechanistic model of how topology within the nucleus is organized. Participation in the 4DN program would provide the opportunity to compare and integrate our CUT&RUN/PASTE datasets with 4DN datasets on common cell lines and differentiating tissues, ideally positioning consortium investigators to adopt our alternative strategy for their own 4DN efforts.", "uuid": "4ddcac2d-72b6-40a7-ac68-67efba21a0d0", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "badges": [{"badge": {"description": "Experiment Set has replicate experiments with inconsistent metadata", "badge_classification": "Warning", "uuid": "a4df9ff7-fe85-4672-86ac-7c38b5d9c853", "title": "Inconsistent Replicate Info", "warning": "Inconsistent Replicate Info", "status": "released", "@id": "/badges/inconsistent-replicate-info/", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "display_title": "Inconsistent Replicate Info", "@type": ["Badge", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "messages": ["Inconsistent replicate information in:", "imaging_paths.path.imaging rounds: 1-75, 1-71"]}], "status": "released", "aliases": ["henikoff-lab:cutnrun_H1_H2AZ_AM39113_repset"], "accession": "4DNESSJEFJKQ", "condition": "Active Motif 39113", "description": "Replicates of CUT&RUN on H1-ESC cells using H2A.Z (Active Motif 39113)", "date_created": "2022-03-14T23:03:56.002107+00:00", "submitted_by": {"error": "no view permissions"}, "dataset_label": "H2A.Z - H1-ESC", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2022-11-03T14:31:04.862112+00:00"}, "public_release": "2022-03-14", "replicate_exps": [{"bio_rep_no": 1, "tec_rep_no": 1, "replicate_exp": {"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXHKQPX6M", "@type": ["ExperimentSeq", "Experiment", "Item"], "uuid": "70f84cf5-98f6-47e6-9141-8163753c4c63", "status": "released", "accession": "4DNEXHKQPX6M", "@id": "/experiments-seq/4DNEXHKQPX6M/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"bio_rep_no": 2, "tec_rep_no": 1, "replicate_exp": {"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXVI32HTD", "@type": ["ExperimentSeq", "Experiment", "Item"], "uuid": "82e97762-84e3-46db-8d12-2d8b249f31d0", "status": "released", "accession": "4DNEXVI32HTD", "@id": "/experiments-seq/4DNEXVI32HTD/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"bio_rep_no": 3, "tec_rep_no": 1, "replicate_exp": {"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXC9WUFPA", "@type": ["ExperimentSeq", "Experiment", "Item"], "uuid": "bc175b99-26b7-4612-8ca7-61fd7301ef6d", "status": "released", "accession": "4DNEXC9WUFPA", "@id": "/experiments-seq/4DNEXC9WUFPA/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "schema_version": "2", "static_headers": [{"lab": {"display_title": "4DN DCIC, HMS", "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "body": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "name": "item-page-headers.ExperimentSet.data-usage-guidelines", "award": {"@id": "/awards/1U01CA200059-01/", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Data Usage Guidelines", "status": "released", "aliases": [], "options": {"filetype": "md", "title_icon": "exclamation-circle", "collapsible": false, "default_open": true, "convert_ext_links": true}, "date_created": "2018-08-06T03:09:55.543206+00:00", "section_type": "Item Page Header", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2023-09-26T10:36:18.063694+00:00"}, "schema_version": "2", "@id": "/static-sections/621e8359-3885-40ce-965d-91894aa7b758/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "621e8359-3885-40ce-965d-91894aa7b758", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267228139"]}, "display_title": "Data Usage Guidelines", "external_references": [], "content": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "filetype": "md", "content_as_html": "

Data Use Guidelines: This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n(doi:10.1038/nature23884) \nand the 4DN Data Portal paper \n(doi:10.1038/s41467-022-29697-4), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

"}, {"error": "no view permissions"}], "project_release": "2022-03-14", "experiments_in_set": [{"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXHKQPX6M", "uuid": "70f84cf5-98f6-47e6-9141-8163753c4c63", "status": "released", "files": [{"file_type": "reads", "file_classification": "raw file", "md5sum": "61f4de934f7ff37180d0213c787bb1b0", "href": "/files-fastq/4DNFIOXB4NOH/@@download/4DNFIOXB4NOH.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "725150fb-b895-476b-a80c-5aace59167dc", "upload_key": "725150fb-b895-476b-a80c-5aace59167dc/4DNFIOXB4NOH.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/725150fb-b895-476b-a80c-5aace59167dc/4DNFIOXB4NOH.fastq.gz", "accession": "4DNFIOXB4NOH", "display_title": "4DNFIOXB4NOH.fastq.gz", "status": "released", "file_size": 109202862, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIOXB4NOH/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFILMHOUZC", "paired_end": "2", "uuid": "fc122198-9443-4bfc-9ba0-b74adfe38e73", "file_type": "reads", "@id": "/files-fastq/4DNFILMHOUZC/", "display_title": "4DNFILMHOUZC.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "8df22367-3bcc-479e-bdba-7710f515a411", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOXB4NOH/fastqc_report.html", "@id": "/quality-metrics-fastqc/8df22367-3bcc-479e-bdba-7710f515a411/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "403b25f042e247640e5b5e5f80b14830", "href": "/files-fastq/4DNFILMHOUZC/@@download/4DNFILMHOUZC.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "fc122198-9443-4bfc-9ba0-b74adfe38e73", "upload_key": "fc122198-9443-4bfc-9ba0-b74adfe38e73/4DNFILMHOUZC.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fc122198-9443-4bfc-9ba0-b74adfe38e73/4DNFILMHOUZC.fastq.gz", "accession": "4DNFILMHOUZC", "display_title": "4DNFILMHOUZC.fastq.gz", "status": "released", "file_size": 110333695, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFILMHOUZC/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIOXB4NOH", "paired_end": "1", "uuid": "725150fb-b895-476b-a80c-5aace59167dc", "file_type": "reads", "@id": "/files-fastq/4DNFIOXB4NOH/", "display_title": "4DNFIOXB4NOH.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "92067f60-2322-47b9-82e0-93f5cfc996c2", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILMHOUZC/fastqc_report.html", "@id": "/quality-metrics-fastqc/92067f60-2322-47b9-82e0-93f5cfc996c2/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "936007e99df75f370e2742bd563b4466", "href": "/files-fastq/4DNFIMTMXANT/@@download/4DNFIMTMXANT.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "752a0523-efb6-46d9-b485-bd5366f09ee3", "upload_key": "752a0523-efb6-46d9-b485-bd5366f09ee3/4DNFIMTMXANT.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/752a0523-efb6-46d9-b485-bd5366f09ee3/4DNFIMTMXANT.fastq.gz", "accession": "4DNFIMTMXANT", "display_title": "4DNFIMTMXANT.fastq.gz", "status": "released", "file_size": 109910729, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIMTMXANT/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIPSB3Z5A", "paired_end": "2", "uuid": "f5c0524b-df53-4da4-8ec7-d3743401f7c5", "file_type": "reads", "@id": "/files-fastq/4DNFIPSB3Z5A/", "display_title": "4DNFIPSB3Z5A.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "bfad69c7-ad59-4183-a3cb-c3d092f18bb0", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMTMXANT/fastqc_report.html", "@id": "/quality-metrics-fastqc/bfad69c7-ad59-4183-a3cb-c3d092f18bb0/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "96447088ff2a2fedc3cf9dfcd9ff96be", "href": "/files-fastq/4DNFIPSB3Z5A/@@download/4DNFIPSB3Z5A.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "f5c0524b-df53-4da4-8ec7-d3743401f7c5", "upload_key": "f5c0524b-df53-4da4-8ec7-d3743401f7c5/4DNFIPSB3Z5A.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f5c0524b-df53-4da4-8ec7-d3743401f7c5/4DNFIPSB3Z5A.fastq.gz", "accession": "4DNFIPSB3Z5A", "display_title": "4DNFIPSB3Z5A.fastq.gz", "status": "released", "file_size": 111014158, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPSB3Z5A/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIMTMXANT", "paired_end": "1", "uuid": "752a0523-efb6-46d9-b485-bd5366f09ee3", "file_type": "reads", "@id": "/files-fastq/4DNFIMTMXANT/", "display_title": "4DNFIMTMXANT.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "4c03bb1b-2d5b-44ee-86f9-444815987f74", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPSB3Z5A/fastqc_report.html", "@id": "/quality-metrics-fastqc/4c03bb1b-2d5b-44ee-86f9-444815987f74/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "d47576e8672436c21e751b958c4871d1", "href": "/files-fastq/4DNFIHKEPRLT/@@download/4DNFIHKEPRLT.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "4ac129a5-0f52-4029-b2d7-c77f4059a935", "upload_key": "4ac129a5-0f52-4029-b2d7-c77f4059a935/4DNFIHKEPRLT.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4ac129a5-0f52-4029-b2d7-c77f4059a935/4DNFIHKEPRLT.fastq.gz", "accession": "4DNFIHKEPRLT", "display_title": "4DNFIHKEPRLT.fastq.gz", "status": "released", "file_size": 108989693, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHKEPRLT/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIZ9HJHMH", "paired_end": "2", "uuid": "d3aee6cf-7d48-4a0b-b6d0-2b4f384120e7", "file_type": "reads", "@id": "/files-fastq/4DNFIZ9HJHMH/", "display_title": "4DNFIZ9HJHMH.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "242d9319-1d6d-4161-a99f-373fc91ed80c", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHKEPRLT/fastqc_report.html", "@id": "/quality-metrics-fastqc/242d9319-1d6d-4161-a99f-373fc91ed80c/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "01ff0d8dc45436d4263244db89eedb34", "href": "/files-fastq/4DNFIZ9HJHMH/@@download/4DNFIZ9HJHMH.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "d3aee6cf-7d48-4a0b-b6d0-2b4f384120e7", "upload_key": "d3aee6cf-7d48-4a0b-b6d0-2b4f384120e7/4DNFIZ9HJHMH.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d3aee6cf-7d48-4a0b-b6d0-2b4f384120e7/4DNFIZ9HJHMH.fastq.gz", "accession": "4DNFIZ9HJHMH", "display_title": "4DNFIZ9HJHMH.fastq.gz", "status": "released", "file_size": 110081987, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIZ9HJHMH/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIHKEPRLT", "paired_end": "1", "uuid": "4ac129a5-0f52-4029-b2d7-c77f4059a935", "file_type": "reads", "@id": "/files-fastq/4DNFIHKEPRLT/", "display_title": "4DNFIHKEPRLT.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "216df028-25f3-4b2e-b900-0cdc0168f7a3", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZ9HJHMH/fastqc_report.html", "@id": "/quality-metrics-fastqc/216df028-25f3-4b2e-b900-0cdc0168f7a3/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "cfdbec4c31763ae2592ccc8f44661ed6", "href": "/files-fastq/4DNFIW2Y8BBQ/@@download/4DNFIW2Y8BBQ.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "5711845e-d846-4e39-89fa-5fbb22a4a86f", "upload_key": "5711845e-d846-4e39-89fa-5fbb22a4a86f/4DNFIW2Y8BBQ.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5711845e-d846-4e39-89fa-5fbb22a4a86f/4DNFIW2Y8BBQ.fastq.gz", "accession": "4DNFIW2Y8BBQ", "display_title": "4DNFIW2Y8BBQ.fastq.gz", "status": "released", "file_size": 109379222, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIW2Y8BBQ/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIBNA7Y2C", "paired_end": "2", "uuid": "9b1ff4a0-6835-46eb-a220-ca428572c462", "file_type": "reads", "@id": "/files-fastq/4DNFIBNA7Y2C/", "display_title": "4DNFIBNA7Y2C.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "0fd890f5-aee6-48c8-85f6-940aec5986e6", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW2Y8BBQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/0fd890f5-aee6-48c8-85f6-940aec5986e6/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "9e341585cc5fe73d1a569e37ee77feee", "href": "/files-fastq/4DNFIBNA7Y2C/@@download/4DNFIBNA7Y2C.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "9b1ff4a0-6835-46eb-a220-ca428572c462", "upload_key": "9b1ff4a0-6835-46eb-a220-ca428572c462/4DNFIBNA7Y2C.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9b1ff4a0-6835-46eb-a220-ca428572c462/4DNFIBNA7Y2C.fastq.gz", "accession": "4DNFIBNA7Y2C", "display_title": "4DNFIBNA7Y2C.fastq.gz", "status": "released", "file_size": 110479891, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBNA7Y2C/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIW2Y8BBQ", "paired_end": "1", "uuid": "5711845e-d846-4e39-89fa-5fbb22a4a86f", "file_type": "reads", "@id": "/files-fastq/4DNFIW2Y8BBQ/", "display_title": "4DNFIW2Y8BBQ.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "e163f59a-37d9-4391-9061-a1ef7f6ca721", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBNA7Y2C/fastqc_report.html", "@id": "/quality-metrics-fastqc/e163f59a-37d9-4391-9061-a1ef7f6ca721/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "2ff9710700773cd799ee834ce13d6d9f", "href": "/files-fastq/4DNFIABI5ARW/@@download/4DNFIABI5ARW.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "ff000e41-cb60-4eec-8993-13c502ebf5c5", "upload_key": "ff000e41-cb60-4eec-8993-13c502ebf5c5/4DNFIABI5ARW.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ff000e41-cb60-4eec-8993-13c502ebf5c5/4DNFIABI5ARW.fastq.gz", "accession": "4DNFIABI5ARW", "display_title": "4DNFIABI5ARW.fastq.gz", "status": "released", "file_size": 110407592, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIABI5ARW/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIT91ZD5W", "paired_end": "2", "uuid": "f67d487a-1aac-476d-8bf4-6c73ed612e69", "file_type": "reads", "@id": "/files-fastq/4DNFIT91ZD5W/", "display_title": "4DNFIT91ZD5W.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "3891a380-c928-48ad-93a0-3c3bb11a9afc", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIABI5ARW/fastqc_report.html", "@id": "/quality-metrics-fastqc/3891a380-c928-48ad-93a0-3c3bb11a9afc/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "a3e47b0bc8635a8c719979b82cf152be", "href": "/files-fastq/4DNFIT91ZD5W/@@download/4DNFIT91ZD5W.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "f67d487a-1aac-476d-8bf4-6c73ed612e69", "upload_key": "f67d487a-1aac-476d-8bf4-6c73ed612e69/4DNFIT91ZD5W.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f67d487a-1aac-476d-8bf4-6c73ed612e69/4DNFIT91ZD5W.fastq.gz", "accession": "4DNFIT91ZD5W", "display_title": "4DNFIT91ZD5W.fastq.gz", "status": "released", "file_size": 111292147, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIT91ZD5W/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIABI5ARW", "paired_end": "1", "uuid": "ff000e41-cb60-4eec-8993-13c502ebf5c5", "file_type": "reads", "@id": "/files-fastq/4DNFIABI5ARW/", "display_title": "4DNFIABI5ARW.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "503a0f8f-bc91-4225-a71b-2fb20ca97649", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT91ZD5W/fastqc_report.html", "@id": "/quality-metrics-fastqc/503a0f8f-bc91-4225-a71b-2fb20ca97649/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "0fbc4e81547a02c393632d22242f23ed", "href": "/files-fastq/4DNFI5TBKNYX/@@download/4DNFI5TBKNYX.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "0b5dd4b1-f26c-40e8-8ff3-a4e93e1190da", "upload_key": "0b5dd4b1-f26c-40e8-8ff3-a4e93e1190da/4DNFI5TBKNYX.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0b5dd4b1-f26c-40e8-8ff3-a4e93e1190da/4DNFI5TBKNYX.fastq.gz", "accession": "4DNFI5TBKNYX", "display_title": "4DNFI5TBKNYX.fastq.gz", "status": "released", "file_size": 108763988, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI5TBKNYX/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI7MS4DBN", "paired_end": "2", "uuid": "62e62c98-e50c-4dae-bac5-12d3eef5e4f6", "file_type": "reads", "@id": "/files-fastq/4DNFI7MS4DBN/", "display_title": "4DNFI7MS4DBN.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "f36929bc-f854-4dad-884a-5b904c509ce3", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5TBKNYX/fastqc_report.html", "@id": "/quality-metrics-fastqc/f36929bc-f854-4dad-884a-5b904c509ce3/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "4f71b544083e5935c2606312b352d586", "href": "/files-fastq/4DNFI7MS4DBN/@@download/4DNFI7MS4DBN.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "62e62c98-e50c-4dae-bac5-12d3eef5e4f6", "upload_key": "62e62c98-e50c-4dae-bac5-12d3eef5e4f6/4DNFI7MS4DBN.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/62e62c98-e50c-4dae-bac5-12d3eef5e4f6/4DNFI7MS4DBN.fastq.gz", "accession": "4DNFI7MS4DBN", "display_title": "4DNFI7MS4DBN.fastq.gz", "status": "released", "file_size": 109843852, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI7MS4DBN/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI5TBKNYX", "paired_end": "1", "uuid": "0b5dd4b1-f26c-40e8-8ff3-a4e93e1190da", "file_type": "reads", "@id": "/files-fastq/4DNFI5TBKNYX/", "display_title": "4DNFI5TBKNYX.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "c766d04a-5ef7-4e2f-ad2d-3da6ddb2e8c3", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7MS4DBN/fastqc_report.html", "@id": "/quality-metrics-fastqc/c766d04a-5ef7-4e2f-ad2d-3da6ddb2e8c3/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "eb7361d76d594493debdd01d6948abac", "href": "/files-fastq/4DNFITUXPJN2/@@download/4DNFITUXPJN2.fastq.gz", "paired_end": "1", "extra_files": [], "uuid": "aca9abde-d8df-49a9-81c1-899eafb31041", "upload_key": "aca9abde-d8df-49a9-81c1-899eafb31041/4DNFITUXPJN2.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/aca9abde-d8df-49a9-81c1-899eafb31041/4DNFITUXPJN2.fastq.gz", "accession": "4DNFITUXPJN2", "display_title": "4DNFITUXPJN2.fastq.gz", "status": "released", "file_size": 56733683, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFITUXPJN2/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI2YHB4ZG", "paired_end": "2", "uuid": "c0faf4c0-a1c4-48e5-9420-326fb07470b2", "file_type": "reads", "@id": "/files-fastq/4DNFI2YHB4ZG/", "display_title": "4DNFI2YHB4ZG.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 2052838, "uuid": "2cba69d7-df06-47c4-9e32-f73998779c7a", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITUXPJN2/fastqc_report.html", "@id": "/quality-metrics-fastqc/2cba69d7-df06-47c4-9e32-f73998779c7a/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "9b48e28cb60ce3e89e364c58c4440036", "href": "/files-fastq/4DNFI2YHB4ZG/@@download/4DNFI2YHB4ZG.fastq.gz", "paired_end": "2", "extra_files": [], "uuid": "c0faf4c0-a1c4-48e5-9420-326fb07470b2", "upload_key": "c0faf4c0-a1c4-48e5-9420-326fb07470b2/4DNFI2YHB4ZG.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c0faf4c0-a1c4-48e5-9420-326fb07470b2/4DNFI2YHB4ZG.fastq.gz", "accession": "4DNFI2YHB4ZG", "display_title": "4DNFI2YHB4ZG.fastq.gz", "status": "released", "file_size": 57190718, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2YHB4ZG/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFITUXPJN2", "paired_end": "1", "uuid": "aca9abde-d8df-49a9-81c1-899eafb31041", "file_type": "reads", "@id": "/files-fastq/4DNFITUXPJN2/", "display_title": "4DNFITUXPJN2.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 2052838, "uuid": "d6efbe35-136f-4d7e-9d0b-907e9eb90e08", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2YHB4ZG/fastqc_report.html", "@id": "/quality-metrics-fastqc/d6efbe35-136f-4d7e-9d0b-907e9eb90e08/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-02-27", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@type": ["ExperimentSeq", "Experiment", "Item"], "@id": "/experiments-seq/4DNEXHKQPX6M/", "accession": "4DNEXHKQPX6M", "processed_files": [{"error": "no view permissions"}, {"error": "no view permissions"}], "biosample": {"biosample_category": ["H1-hESC", "Human stem cell"], "treatments_summary": "None", "accession": "4DNBSPZBDO92", "display_title": "4DNBSPZBDO92", "@id": "/biosamples/4DNBSPZBDO92/", "status": "released", "biosample_type": "stem cells", "biosource_summary": "H1-hESC (Tier 1)", "modifications_summary": "None", "@type": ["Biosample", "Item"], "uuid": "7e38921c-7f59-4be7-88c9-29c28b546ab1", "biosource": [{"status": "released", "biosource_type": "stem cell derived cell line", "display_title": "H1-hESC (Tier 1) - 4DNSRV3SKQ8M", "@id": "/biosources/4DNSRV3SKQ8M/", "accession": "4DNSRV3SKQ8M", "cell_line_tier": "Tier 1", "uuid": "68172441-97c4-40cc-b73f-d0f5dbc5cc05", "@type": ["Biosource", "Item"], "cell_line": {"term_name": "H1-hESC", "status": "released", "preferred_name": "H1-hESC", "@id": "/ontology-terms/EFO:0003042/", "uuid": "c3f6e06f-900e-45f9-9c23-983c5673f58d", "@type": ["OntologyTerm", "Item"], "synonyms": ["H1"], "term_id": "EFO:0003042", "display_title": "H1-hESC", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/GO:0005623/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/CL:0000000/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"name": "human", "@type": ["Organism", "Item"], "display_title": "H. sapiens", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "@id": "/organisms/9606/", "scientific_name": "Homo sapiens", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"status": "released", "@type": ["OntologyTerm", "Item"], "synonyms": ["animal stem cell"], "display_title": "stem cell", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "term_name": "stem cell", "@id": "/ontology-terms/CL:0000034/", "preferred_name": "stem cell", "term_id": "CL:0000034", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/GO:0005623/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/CL:0000000/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "modifications": [], "cell_culture_details": [{"uuid": "7a49e7b8-dee8-4b3f-971d-507bb1be8546", "@id": "/biosample-cell-cultures/7a49e7b8-dee8-4b3f-971d-507bb1be8546/", "@type": ["BiosampleCellCulture", "Item"], "display_title": "BiosampleCellCulture from 2018-02-23", "status": "released", "in_vitro_differentiated": "No", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "badges": [{"messages": ["Biosample missing doubling_number"], "badge": {"description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "status": "released", "badge_classification": "Warning", "@type": ["Badge", "Item"], "warning": "Biosample Metadata Incomplete", "badge_icon": "/static/img/badges/biosample-icon.svg", "title": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "display_title": "Biosample Metadata Incomplete", "@id": "/badges/biosample-metadata-incomplete/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "treatments": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"assay_classification": "Linear DNA Enrichment", "status": "released", "assay_subclass_short": "DNA binding", "assay_subclassification": "DNA Binding", "uuid": "64166b28-444f-46d6-bf98-f419eb72ccac", "@id": "/experiment-types/cut-n-run/", "display_title": "CUT&RUN", "@type": ["ExperimentType", "Item"], "title": "CUT&RUN", "other_tags": ["1D"], "experiment_category": "Sequencing", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "external_references": [], "experiment_categorizer": {"value": "H2A.Z protein", "field": "Target", "combined": "Target: H2A.Z protein"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-11-22T17:38:18.491918+00:00"}}, {"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXVI32HTD", "uuid": "82e97762-84e3-46db-8d12-2d8b249f31d0", "status": "released", "files": [{"file_type": "reads", "file_classification": "raw file", "md5sum": "59b57890a1219b6af1aa68dd27bfb3f2", "href": "/files-fastq/4DNFI9LUNNFW/@@download/4DNFI9LUNNFW.fastq.gz", "paired_end": "1", "uuid": "b4b8bcdd-74b1-4268-a4cf-400c3e9a556e", "upload_key": "b4b8bcdd-74b1-4268-a4cf-400c3e9a556e/4DNFI9LUNNFW.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b4b8bcdd-74b1-4268-a4cf-400c3e9a556e/4DNFI9LUNNFW.fastq.gz", "accession": "4DNFI9LUNNFW", "display_title": "4DNFI9LUNNFW.fastq.gz", "status": "released", "file_size": 106379761, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI9LUNNFW/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIPAA5A1Y", "paired_end": "2", "uuid": "b23bba5b-cf59-4182-a5ba-83bff4059263", "file_type": "reads", "@id": "/files-fastq/4DNFIPAA5A1Y/", "display_title": "4DNFIPAA5A1Y.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "0859c0b5-0edf-40fa-9212-a969d28a3199", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9LUNNFW/fastqc_report.html", "@id": "/quality-metrics-fastqc/0859c0b5-0edf-40fa-9212-a969d28a3199/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "79e668d672f90c97e346f2ec473b979b", "href": "/files-fastq/4DNFIPAA5A1Y/@@download/4DNFIPAA5A1Y.fastq.gz", "paired_end": "2", "uuid": "b23bba5b-cf59-4182-a5ba-83bff4059263", "upload_key": "b23bba5b-cf59-4182-a5ba-83bff4059263/4DNFIPAA5A1Y.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b23bba5b-cf59-4182-a5ba-83bff4059263/4DNFIPAA5A1Y.fastq.gz", "accession": "4DNFIPAA5A1Y", "display_title": "4DNFIPAA5A1Y.fastq.gz", "status": "released", "file_size": 107768442, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPAA5A1Y/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI9LUNNFW", "paired_end": "1", "uuid": "b4b8bcdd-74b1-4268-a4cf-400c3e9a556e", "file_type": "reads", "@id": "/files-fastq/4DNFI9LUNNFW/", "display_title": "4DNFI9LUNNFW.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "d58efd3f-05f7-42ca-a902-c5b4a75b1557", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPAA5A1Y/fastqc_report.html", "@id": "/quality-metrics-fastqc/d58efd3f-05f7-42ca-a902-c5b4a75b1557/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "94473985678ce81e60bc9be0f1f73b26", "href": "/files-fastq/4DNFIONSOQCN/@@download/4DNFIONSOQCN.fastq.gz", "paired_end": "1", "uuid": "4c19d9bc-315a-4de3-9e71-a853475f0235", "upload_key": "4c19d9bc-315a-4de3-9e71-a853475f0235/4DNFIONSOQCN.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4c19d9bc-315a-4de3-9e71-a853475f0235/4DNFIONSOQCN.fastq.gz", "accession": "4DNFIONSOQCN", "display_title": "4DNFIONSOQCN.fastq.gz", "status": "released", "file_size": 104649323, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIONSOQCN/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFISUFQIOV", "paired_end": "2", "uuid": "c4de804e-570c-45fd-874c-9f198681466d", "file_type": "reads", "@id": "/files-fastq/4DNFISUFQIOV/", "display_title": "4DNFISUFQIOV.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "404d8975-7bff-4e74-8f5c-c9ee588cea82", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIONSOQCN/fastqc_report.html", "@id": "/quality-metrics-fastqc/404d8975-7bff-4e74-8f5c-c9ee588cea82/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "7d5859f07a5895d9b52c6f426b5b2a09", "href": "/files-fastq/4DNFISUFQIOV/@@download/4DNFISUFQIOV.fastq.gz", "paired_end": "2", "uuid": "c4de804e-570c-45fd-874c-9f198681466d", "upload_key": "c4de804e-570c-45fd-874c-9f198681466d/4DNFISUFQIOV.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c4de804e-570c-45fd-874c-9f198681466d/4DNFISUFQIOV.fastq.gz", "accession": "4DNFISUFQIOV", "display_title": "4DNFISUFQIOV.fastq.gz", "status": "released", "file_size": 106326676, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISUFQIOV/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIONSOQCN", "paired_end": "1", "uuid": "4c19d9bc-315a-4de3-9e71-a853475f0235", "file_type": "reads", "@id": "/files-fastq/4DNFIONSOQCN/", "display_title": "4DNFIONSOQCN.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "0fa347b8-30e9-4303-8551-b40bfe67a757", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISUFQIOV/fastqc_report.html", "@id": "/quality-metrics-fastqc/0fa347b8-30e9-4303-8551-b40bfe67a757/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "3c088110f847142cc4fd0ee1f1036fec", "href": "/files-fastq/4DNFIJKGFNLG/@@download/4DNFIJKGFNLG.fastq.gz", "paired_end": "1", "uuid": "d7c0376a-5fa6-4558-9ee4-0e3fde9adc5a", "upload_key": "d7c0376a-5fa6-4558-9ee4-0e3fde9adc5a/4DNFIJKGFNLG.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d7c0376a-5fa6-4558-9ee4-0e3fde9adc5a/4DNFIJKGFNLG.fastq.gz", "accession": "4DNFIJKGFNLG", "display_title": "4DNFIJKGFNLG.fastq.gz", "status": "released", "file_size": 17610117, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJKGFNLG/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIE4Z8YJ2", "paired_end": "2", "uuid": "490ab2c4-2fd2-4897-82bc-e39522d91cdf", "file_type": "reads", "@id": "/files-fastq/4DNFIE4Z8YJ2/", "display_title": "4DNFIE4Z8YJ2.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 652788, "uuid": "507b653b-c345-4873-8a9d-172ccf7825f6", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJKGFNLG/fastqc_report.html", "@id": "/quality-metrics-fastqc/507b653b-c345-4873-8a9d-172ccf7825f6/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "9e432be2e976f8400659bb9cf170e363", "href": "/files-fastq/4DNFIE4Z8YJ2/@@download/4DNFIE4Z8YJ2.fastq.gz", "paired_end": "2", "uuid": "490ab2c4-2fd2-4897-82bc-e39522d91cdf", "upload_key": "490ab2c4-2fd2-4897-82bc-e39522d91cdf/4DNFIE4Z8YJ2.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/490ab2c4-2fd2-4897-82bc-e39522d91cdf/4DNFIE4Z8YJ2.fastq.gz", "accession": "4DNFIE4Z8YJ2", "display_title": "4DNFIE4Z8YJ2.fastq.gz", "status": "released", "file_size": 17832668, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIE4Z8YJ2/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIJKGFNLG", "paired_end": "1", "uuid": "d7c0376a-5fa6-4558-9ee4-0e3fde9adc5a", "file_type": "reads", "@id": "/files-fastq/4DNFIJKGFNLG/", "display_title": "4DNFIJKGFNLG.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 652788, "uuid": "53ed429e-bc2c-4067-b121-a26c724772d3", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE4Z8YJ2/fastqc_report.html", "@id": "/quality-metrics-fastqc/53ed429e-bc2c-4067-b121-a26c724772d3/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@type": ["ExperimentSeq", "Experiment", "Item"], "@id": "/experiments-seq/4DNEXVI32HTD/", "accession": "4DNEXVI32HTD", "processed_files": [{"error": "no view permissions"}, {"error": "no view permissions"}], "biosample": {"biosample_category": ["H1-hESC", "Human stem cell"], "treatments_summary": "None", "accession": "4DNBSIDU2JA7", "display_title": "4DNBSIDU2JA7", "@id": "/biosamples/4DNBSIDU2JA7/", "status": "released", "biosample_type": "stem cells", "biosource_summary": "H1-hESC (Tier 1)", "modifications_summary": "None", "@type": ["Biosample", "Item"], "uuid": "0468017d-b355-46e2-8fc2-d409e3a0516f", "biosource": [{"status": "released", "biosource_type": "stem cell derived cell line", "display_title": "H1-hESC (Tier 1) - 4DNSRV3SKQ8M", "@id": "/biosources/4DNSRV3SKQ8M/", "accession": "4DNSRV3SKQ8M", "cell_line_tier": "Tier 1", "uuid": "68172441-97c4-40cc-b73f-d0f5dbc5cc05", "@type": ["Biosource", "Item"], "cell_line": {"term_name": "H1-hESC", "status": "released", "preferred_name": "H1-hESC", "@id": "/ontology-terms/EFO:0003042/", "uuid": "c3f6e06f-900e-45f9-9c23-983c5673f58d", "@type": ["OntologyTerm", "Item"], "synonyms": ["H1"], "term_id": "EFO:0003042", "display_title": "H1-hESC", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/GO:0005623/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/CL:0000000/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"name": "human", "@type": ["Organism", "Item"], "display_title": "H. sapiens", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "@id": "/organisms/9606/", "scientific_name": "Homo sapiens", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"status": "released", "@type": ["OntologyTerm", "Item"], "synonyms": ["animal stem cell"], "display_title": "stem cell", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "term_name": "stem cell", "@id": "/ontology-terms/CL:0000034/", "preferred_name": "stem cell", "term_id": "CL:0000034", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/GO:0005623/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/CL:0000000/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "modifications": [], "cell_culture_details": [{"uuid": "0796fe52-ae57-430b-8fc5-3dc186325215", "@id": "/biosample-cell-cultures/0796fe52-ae57-430b-8fc5-3dc186325215/", "@type": ["BiosampleCellCulture", "Item"], "display_title": "BiosampleCellCulture from 2018-04-25", "status": "released", "in_vitro_differentiated": "No", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "badges": [{"messages": ["Biosample missing doubling_number"], "badge": {"description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "status": "released", "badge_classification": "Warning", "@type": ["Badge", "Item"], "warning": "Biosample Metadata Incomplete", "badge_icon": "/static/img/badges/biosample-icon.svg", "title": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "display_title": "Biosample Metadata Incomplete", "@id": "/badges/biosample-metadata-incomplete/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "treatments": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"assay_classification": "Linear DNA Enrichment", "status": "released", "assay_subclass_short": "DNA binding", "assay_subclassification": "DNA Binding", "uuid": "64166b28-444f-46d6-bf98-f419eb72ccac", "@id": "/experiment-types/cut-n-run/", "display_title": "CUT&RUN", "@type": ["ExperimentType", "Item"], "title": "CUT&RUN", "other_tags": ["1D"], "experiment_category": "Sequencing", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "external_references": [], "experiment_categorizer": {"value": "H2A.Z protein", "field": "Target", "combined": "Target: H2A.Z protein"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-11-22T17:38:11.024643+00:00"}}, {"display_title": "CUT&RUN against H2A.Z protein on H1-hESC (Tier 1) - 4DNEXC9WUFPA", "uuid": "bc175b99-26b7-4612-8ca7-61fd7301ef6d", "status": "released", "files": [{"file_type": "reads", "file_classification": "raw file", "md5sum": "1e22fa2fcd39ce8158aea9673355221f", "href": "/files-fastq/4DNFI6MVQMTK/@@download/4DNFI6MVQMTK.fastq.gz", "paired_end": "1", "uuid": "cae853d4-cfb1-4485-a4fd-fb66a79a9786", "upload_key": "cae853d4-cfb1-4485-a4fd-fb66a79a9786/4DNFI6MVQMTK.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cae853d4-cfb1-4485-a4fd-fb66a79a9786/4DNFI6MVQMTK.fastq.gz", "accession": "4DNFI6MVQMTK", "display_title": "4DNFI6MVQMTK.fastq.gz", "status": "released", "file_size": 108299115, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6MVQMTK/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIUD9MZXB", "paired_end": "2", "uuid": "97423d11-b6a7-43d8-9bf9-44ffed4e3a3c", "file_type": "reads", "@id": "/files-fastq/4DNFIUD9MZXB/", "display_title": "4DNFIUD9MZXB.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "80d5572d-876f-4cdf-9eb6-b573e4b07eed", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6MVQMTK/fastqc_report.html", "@id": "/quality-metrics-fastqc/80d5572d-876f-4cdf-9eb6-b573e4b07eed/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "175f6ae7e4d25b6df4599915c390ef16", "href": "/files-fastq/4DNFIUD9MZXB/@@download/4DNFIUD9MZXB.fastq.gz", "paired_end": "2", "uuid": "97423d11-b6a7-43d8-9bf9-44ffed4e3a3c", "upload_key": "97423d11-b6a7-43d8-9bf9-44ffed4e3a3c/4DNFIUD9MZXB.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/97423d11-b6a7-43d8-9bf9-44ffed4e3a3c/4DNFIUD9MZXB.fastq.gz", "accession": "4DNFIUD9MZXB", "display_title": "4DNFIUD9MZXB.fastq.gz", "status": "released", "file_size": 109789712, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUD9MZXB/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI6MVQMTK", "paired_end": "1", "uuid": "cae853d4-cfb1-4485-a4fd-fb66a79a9786", "file_type": "reads", "@id": "/files-fastq/4DNFI6MVQMTK/", "display_title": "4DNFI6MVQMTK.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "61103145-78a0-4bfd-a6bf-ebaef1165a23", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUD9MZXB/fastqc_report.html", "@id": "/quality-metrics-fastqc/61103145-78a0-4bfd-a6bf-ebaef1165a23/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "8386be45ebfa3c682f769bbb6b667a81", "href": "/files-fastq/4DNFIQJOU93G/@@download/4DNFIQJOU93G.fastq.gz", "paired_end": "1", "uuid": "6a8e2e85-04fb-4486-8de3-6353513780d1", "upload_key": "6a8e2e85-04fb-4486-8de3-6353513780d1/4DNFIQJOU93G.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6a8e2e85-04fb-4486-8de3-6353513780d1/4DNFIQJOU93G.fastq.gz", "accession": "4DNFIQJOU93G", "display_title": "4DNFIQJOU93G.fastq.gz", "status": "released", "file_size": 107295159, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQJOU93G/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIUOVS1EP", "paired_end": "2", "uuid": "88b2c6ae-eddf-4e72-96d8-ed78a42ddf4c", "file_type": "reads", "@id": "/files-fastq/4DNFIUOVS1EP/", "display_title": "4DNFIUOVS1EP.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "8c482512-f427-4319-940b-4ec2420fef47", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQJOU93G/fastqc_report.html", "@id": "/quality-metrics-fastqc/8c482512-f427-4319-940b-4ec2420fef47/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "d46ea38850142a10b8fb6e1f1f3a5a8b", "href": "/files-fastq/4DNFIUOVS1EP/@@download/4DNFIUOVS1EP.fastq.gz", "paired_end": "2", "uuid": "88b2c6ae-eddf-4e72-96d8-ed78a42ddf4c", "upload_key": "88b2c6ae-eddf-4e72-96d8-ed78a42ddf4c/4DNFIUOVS1EP.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/88b2c6ae-eddf-4e72-96d8-ed78a42ddf4c/4DNFIUOVS1EP.fastq.gz", "accession": "4DNFIUOVS1EP", "display_title": "4DNFIUOVS1EP.fastq.gz", "status": "released", "file_size": 108843901, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUOVS1EP/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIQJOU93G", "paired_end": "1", "uuid": "6a8e2e85-04fb-4486-8de3-6353513780d1", "file_type": "reads", "@id": "/files-fastq/4DNFIQJOU93G/", "display_title": "4DNFIQJOU93G.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 4000000, "uuid": "71978294-10f5-4490-88b2-2738edb016f3", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUOVS1EP/fastqc_report.html", "@id": "/quality-metrics-fastqc/71978294-10f5-4490-88b2-2738edb016f3/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-03", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "f25ca601b5323998930e207d76913964", "href": "/files-fastq/4DNFI6G3I6LL/@@download/4DNFI6G3I6LL.fastq.gz", "paired_end": "1", "uuid": "6bd31f48-277a-4997-9117-3dccba1afcce", "upload_key": "6bd31f48-277a-4997-9117-3dccba1afcce/4DNFI6G3I6LL.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6bd31f48-277a-4997-9117-3dccba1afcce/4DNFI6G3I6LL.fastq.gz", "accession": "4DNFI6G3I6LL", "display_title": "4DNFI6G3I6LL.fastq.gz", "status": "released", "file_size": 22806359, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6G3I6LL/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFIASTLIHI", "paired_end": "2", "uuid": "74ef9a82-c99b-4492-a961-77c8ca904905", "file_type": "reads", "@id": "/files-fastq/4DNFIASTLIHI/", "display_title": "4DNFIASTLIHI.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 826057, "uuid": "475e449a-e754-43bc-96fd-d0c47b830139", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6G3I6LL/fastqc_report.html", "@id": "/quality-metrics-fastqc/475e449a-e754-43bc-96fd-d0c47b830139/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_type": "reads", "file_classification": "raw file", "md5sum": "c3f44944008bb3a0df7f111519bb0097", "href": "/files-fastq/4DNFIASTLIHI/@@download/4DNFIASTLIHI.fastq.gz", "paired_end": "2", "uuid": "74ef9a82-c99b-4492-a961-77c8ca904905", "upload_key": "74ef9a82-c99b-4492-a961-77c8ca904905/4DNFIASTLIHI.fastq.gz", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/74ef9a82-c99b-4492-a961-77c8ca904905/4DNFIASTLIHI.fastq.gz", "accession": "4DNFIASTLIHI", "display_title": "4DNFIASTLIHI.fastq.gz", "status": "released", "file_size": 23035338, "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIASTLIHI/", "related_files": [{"relationship_type": "paired with", "file": {"accession": "4DNFI6G3I6LL", "paired_end": "1", "uuid": "6bd31f48-277a-4997-9117-3dccba1afcce", "file_type": "reads", "@id": "/files-fastq/4DNFI6G3I6LL/", "display_title": "4DNFI6G3I6LL.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "file_type_detailed": "reads (fastq)", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "fastq", "display_title": "fastq", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "quality_metric": {"Total Sequences": 826057, "uuid": "c17b520f-396c-41ce-b0e6-fb60a8dca427", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIASTLIHI/fastqc_report.html", "@id": "/quality-metrics-fastqc/c17b520f-396c-41ce-b0e6-fb60a8dca427/", "overall_quality_status": "PASS", "Sequence length": "25", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-05-04", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "steve-henikoff-lab", "uuid": "3a41e042-a9f3-4205-a28a-4c20ba2edda2", "status": "current", "display_title": "Steve Henikoff, FREDHUTCH", "@id": "/labs/steve-henikoff-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3a41e042-a9f3-4205-a28a-4c20ba2edda2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Steve Henikoff, FREDHUTCH", "experiment_type": "CUT&RUN", "experiment_bucket": "raw file", "assay_info": "H2A.Z protein", "dataset": "H2A.Z - H1-ESC", "condition": "Active Motif 39113", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "H1-hESC (Tier 1)", "lab_name": "Steve Henikoff, FREDHUTCH"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@type": ["ExperimentSeq", "Experiment", "Item"], "@id": "/experiments-seq/4DNEXC9WUFPA/", "accession": "4DNEXC9WUFPA", "processed_files": [{"error": "no view permissions"}, {"error": "no view permissions"}], "biosample": {"biosample_category": ["H1-hESC", "Human stem cell"], "treatments_summary": "None", "accession": "4DNBSLWH9RGT", "display_title": "4DNBSLWH9RGT", "@id": "/biosamples/4DNBSLWH9RGT/", "status": "released", "biosample_type": "stem cells", "biosource_summary": "H1-hESC (Tier 1)", "modifications_summary": "None", "@type": ["Biosample", "Item"], "uuid": "8c6e205a-4070-458a-b461-286d4731f763", "biosource": [{"status": "released", "biosource_type": "stem cell derived cell line", "display_title": "H1-hESC (Tier 1) - 4DNSRV3SKQ8M", "@id": "/biosources/4DNSRV3SKQ8M/", "accession": "4DNSRV3SKQ8M", "cell_line_tier": "Tier 1", "uuid": "68172441-97c4-40cc-b73f-d0f5dbc5cc05", "@type": ["Biosource", "Item"], "cell_line": {"term_name": "H1-hESC", "status": "released", "preferred_name": "H1-hESC", "@id": "/ontology-terms/EFO:0003042/", "uuid": "c3f6e06f-900e-45f9-9c23-983c5673f58d", "@type": ["OntologyTerm", "Item"], "synonyms": ["H1"], "term_id": "EFO:0003042", "display_title": "H1-hESC", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/GO:0005623/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/CL:0000000/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"name": "human", "@type": ["Organism", "Item"], "display_title": "H. sapiens", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "@id": "/organisms/9606/", "scientific_name": "Homo sapiens", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"status": "released", "@type": ["OntologyTerm", "Item"], "synonyms": ["animal stem cell"], "display_title": "stem cell", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "term_name": "stem cell", "@id": "/ontology-terms/CL:0000034/", "preferred_name": "stem cell", "term_id": "CL:0000034", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/GO:0005623/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/CL:0000000/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "modifications": [], "cell_culture_details": [{"uuid": "7d2aab34-64f0-4d86-801c-4e9b7a1f3152", "@id": "/biosample-cell-cultures/7d2aab34-64f0-4d86-801c-4e9b7a1f3152/", "@type": ["BiosampleCellCulture", "Item"], "display_title": "BiosampleCellCulture from 2018-04-25", "status": "released", "in_vitro_differentiated": "No", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "badges": [{"messages": ["Biosample missing doubling_number"], "badge": {"description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "status": "released", "badge_classification": "Warning", "@type": ["Badge", "Item"], "warning": "Biosample Metadata Incomplete", "badge_icon": "/static/img/badges/biosample-icon.svg", "title": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "display_title": "Biosample Metadata Incomplete", "@id": "/badges/biosample-metadata-incomplete/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "treatments": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"assay_classification": "Linear DNA Enrichment", "status": "released", "assay_subclass_short": "DNA binding", "assay_subclassification": "DNA Binding", "uuid": "64166b28-444f-46d6-bf98-f419eb72ccac", "@id": "/experiment-types/cut-n-run/", "display_title": "CUT&RUN", "@type": ["ExperimentType", "Item"], "title": "CUT&RUN", "other_tags": ["1D"], "experiment_category": "Sequencing", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "external_references": [], "experiment_categorizer": {"value": "H2A.Z protein", "field": "Target", "combined": "Target: H2A.Z protein"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-11-22T17:38:13.544432+00:00"}}], "experimentset_type": "replicate", "alternate_accessions": ["4DNESOBN7IQE", "4DNESUS14H56"], "@id": "/experiment-set-replicates/4DNESSJEFJKQ/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "4afa9a86-2b7b-4b56-bed1-59279bcd29ef", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNESSJEFJKQ", "external_references": [], "pubs_using": [], "publications_of_set": [], "number_of_experiments": 3, "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/biosamples/4DNBSPZBDO92/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample missing doubling_number"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}, {"parent": "/biosamples/4DNBSIDU2JA7/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample missing doubling_number"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}, {"parent": "/biosamples/4DNBSLWH9RGT/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample missing doubling_number"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}, {"parent": "/experiment-set-replicates/4DNESSJEFJKQ/", "embedded_path": "badges", "item": {"messages": ["Inconsistent replicate information in:", "imaging_paths.path.imaging rounds: 1-75, 1-71"], "badge": {"commendation": null, "warning": "Inconsistent Replicate Info", "uuid": "a4df9ff7-fe85-4672-86ac-7c38b5d9c853", "@id": "/badges/inconsistent-replicate-info/", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "description": "Experiment Set has replicate experiments with inconsistent metadata"}}}]}, "validation-errors": []}