ExperimentSetReplicate

ExperimentSet4DNESSS7VU57
released
View JSON

in situ Hi-C on primary mouse granulosa cells from 23 day old females

   June 2nd, 2021 at 5:26pm
Source Publication
The conserved sex regulator DMRT1 recruits SOX9 in sexual cell fate reprogramming.
Lindeman RE, Murphy MW, et al., Nucleic acids research 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
granulosa cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

9 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESSS7VU57
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2PHVZ5S
544.37m
59.973%
24.36%
15.668%
Experiment
4DNEXIM6ZVL9
Bio Rep 1, Tec Rep 1
in situ Hi-C on granulosa cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIEFEER44
328.38m
61.069%
23.627%
15.304%
Experiment
4DNEXDK2R8M5
Bio Rep 2, Tec Rep 1
in situ Hi-C on granulosa cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFI14LCXRK
215.99m
58.306%
25.473%
16.221%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESSS7VU57
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZ59STGB
250000; 500000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXIM6ZVL9
Bio Rep 1, Tec Rep 1
in situ Hi-C on granulosa cell with Arima - A1, A2
File
Alignments (bam)
4DNFIMY71PHB
585.02m
9.52%
8.974%
11.001%
14.373%
0.081%
Experiment
4DNEXDK2R8M5
Bio Rep 2, Tec Rep 1
in situ Hi-C on granulosa cell with Arima - A1, A2
File
Alignments (bam)
4DNFI3HL48UU
409.81m
9.938%
7.81%
7.4%
22.147%
0.076%