ExperimentSetReplicate

ExperimentSet4DNEST9AVULS
released
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HiC experiment done on SK-MEL-5

   May 5th, 2017 at 6:43pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
SK-MEL-5
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNEST9AVULS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIE9XZEIP
119.16m
40.481%
35.058%
24.461%
Experiment
4DNEX66WBPZF
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Contact List-replicate (pairs)
4DNFIUSHIK15
24.73m
36.525%
41.547%
21.929%
Experiment
4DNEXIHCBS53
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Contact List-replicate (pairs)
4DNFIFTMART5
94.44m
41.517%
33.359%
25.124%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNEST9AVULS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFICYNMTJG
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX66WBPZF
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Alignments (bam)
4DNFIWO8VZ8F
148.05m
13.031%
14.106%
56.161%
0.001%
0.045%
Experiment
4DNEXIHCBS53
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Alignments (bam)
4DNFIDSVQC5O
155.43m
12.539%
14.276%
12.429%
0.001%
0.172%