ExperimentSetReplicate

ExperimentSet4DNESTAPSPUC
released
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Dilution Hi-C experiment on HG00733

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00733
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESTAPSPUC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7EMQA79
352.18m
30.384%
29.196%
40.42%
Experiment
4DNEX94NDZC8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00733 with HindIII
File
Contact List-replicate (pairs)
4DNFIOCWXJ7G
192.9m
29.197%
26.792%
44.011%
Experiment
4DNEXNT317AJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00733 with HindIII
File
Contact List-replicate (pairs)
4DNFICHGXIC3
159.29m
31.821%
32.108%
36.071%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESTAPSPUC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIHGNUBH5
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX94NDZC8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00733 with HindIII
File
Alignments (bam)
4DNFITUTBB23
288.9m
13.187%
8.544%
6.192%
5.307%
0.397%
Experiment
4DNEXNT317AJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00733 with HindIII
File
Alignments (bam)
4DNFIPS8HG1P
236.21m
7.702%
9.011%
12.45%
3.403%
0.442%