ExperimentSetReplicate

ExperimentSet4DNESTI1YC1H
released
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2 biological replicates of Hi-C on G1E-ER4 cells in anaphase/telophase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESTI1YC1H
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI3W39SHF
438.62m
63.684%
27.143%
9.173%
Experiment
4DNEXH8AH6PF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIN5DX6QZ
230.61m
61.304%
31.181%
7.516%
Experiment
4DNEXHGNEL6Z
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFI8MSH7WJ
208.01m
66.323%
22.667%
11.01%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESTI1YC1H
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIRAHQIGN
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXH8AH6PF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIT6KFP8B
375.45m
9.609%
22.243%
2.415%
4.31%
0.101%
Experiment
4DNEXHGNEL6Z
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI1A555G3
330.58m
10.439%
19.804%
1.968%
4.864%
0.097%