ExperimentSetReplicate

ExperimentSet4DNESTZWFM9F
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Replicates of in situ DNase Hi-C on LMNA R225X heterozygous (mutant) hIPSCs differentiated into cardioymyocytes

   February 20th, 2019 at 3:42am
Source Publication
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
Bertero A, Fields PA, et al., The Journal of cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
LMNA-R225X-het
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESTZWFM9F
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIJ1PX9P1
181.31m
24.047%
43.375%
32.578%
Experiment
4DNEX7YXP7XO
Bio Rep 1, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with DNaseI
File
Contact List-replicate (pairs)
4DNFI8KXM2KM
93.95m
22.53%
43.462%
34.008%
Experiment
4DNEXJMHDG7A
Bio Rep 2, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with DNaseI
File
Contact List-replicate (pairs)
4DNFIB3NKPCU
87.36m
25.678%
43.281%
31.04%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESTZWFM9F
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI6LYNE59
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX7YXP7XO
Bio Rep 1, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with DNaseI
File
Alignments (bam)
4DNFIJCAMOVV
152.98m
12.459%
18.546%
3.596%
3.987%
0.4%
Experiment
4DNEXJMHDG7A
Bio Rep 2, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with DNaseI
File
Alignments (bam)
4DNFI28Q4JAI
149.61m
13.267%
18.653%
5.484%
4.201%
0.367%