ExperimentSetReplicate

ExperimentSet4DNESU7SEN5K
released
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HiC experiment done on brain pericyte (HBVP).

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
brain pericyte
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESU7SEN5K
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIM4MJAB9
241.16m
17.106%
74.149%
8.745%
Experiment
4DNEXV6FOCE7
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Contact List-replicate (pairs)
4DNFIT6XTO39
114.08m
12.588%
80.971%
6.441%
Experiment
4DNEXKGWUSH8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Contact List-replicate (pairs)
4DNFIYM6F8Y5
127.08m
21.162%
68.025%
10.813%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESU7SEN5K
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIL6BHWZL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXV6FOCE7
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Alignments (bam)
4DNFIIOIIDO5
169.29m
15.942%
13.655%
3.01%
0.001%
0.126%
Experiment
4DNEXKGWUSH8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Alignments (bam)
4DNFIYHX5TI7
180.02m
13.006%
13.546%
2.856%
0.001%
0.116%