ExperimentSetReplicate

ExperimentSet4DNESU95RUNO
released
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in situ Hi-C on non-heat treated K562 cells with MboI

   October 11th, 2018 at 8:56pm
Source Publication
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.
Ray J, Munn PR, et al., Proceedings of the National Academy of Sciences of the United States of America 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
K562 (Tier 2)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESU95RUNO
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIX5BNC9
109.38m
55.645%
20.673%
23.682%
Experiment
4DNEXYOJPVND
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Contact List-replicate (pairs)
4DNFIYSFSI4P
46.09m
60.523%
16.663%
22.813%
Experiment
4DNEX15IP9D9
Bio Rep 2, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Contact List-replicate (pairs)
4DNFIYMLP8C5
63.29m
52.093%
23.593%
24.315%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESU95RUNO
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI244AS29
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYOJPVND
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Alignments (bam)
4DNFIO6ARWQQ
86.45m
19.29%
26.042%
1.354%
0.0%
0.316%
Experiment
4DNEX15IP9D9
Bio Rep 2, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Alignments (bam)
4DNFIXJFCM2B
128.47m
23.645%
26.264%
0.83%
0.0%
0.467%