ExperimentSetReplicate

ExperimentSet4DNESUCLJAZ8
released
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in situ Hi-C on mouse embryonic stem cell unsorted cells

   August 12th, 2019 at 2:59pm
Source Publication
Multiscale 3D Genome Rewiring during Mouse Neural Development.
Bonev B, Mendelson Cohen N, et al., Cell 2017

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
mESC line with Oct4-GFP
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUCLJAZ8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUHKXYYK
124.1m
65.687%
21.634%
12.679%
Experiment
4DNEXBBP5WX1
Bio Rep 1, Tec Rep 1
in situ Hi-C on mESC line with Oct4-GFP with DpnII
File
Contact List-replicate (pairs)
4DNFI8HX3OB2
124.1m
65.687%
21.634%
12.679%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUCLJAZ8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIDA2WGV8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBBP5WX1
Bio Rep 1, Tec Rep 1
in situ Hi-C on mESC line with Oct4-GFP with DpnII
File
Alignments (bam)
4DNFI7ZIZB2U
184.71m
8.016%
22.956%
1.835%
0.004%
0.064%