ExperimentSetReplicate

ExperimentSet4DNESUGKCFC5
released
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CTCC experiments with in vitro crosslinking with NcoI digestion on GM12878 cells

   January 25th, 2022 at 4:56pm
Source Publication
Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal interactions
Xu J, Kumar S, et al., bioRxiv 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878 (Tier 1)
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: NcoI

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUGKCFC5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFILYBJZUS
16.65m
25.392%
52.236%
22.372%
Experiment
4DNEXJPNZG48
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1) with NcoI
File
Contact List-replicate (pairs)
4DNFI1XG2CG6
16.65m
25.392%
52.236%
22.372%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUGKCFC5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI8FMG978
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXJPNZG48
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1) with NcoI
File
Alignments (bam)
4DNFINYPC6P9
26.39m
12.063%
8.791%
10.271%
5.79%
0.981%