ExperimentSetReplicate

ExperimentSet4DNESUWH55N3
released
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Dilution Hi-C on thymus cells of CD1 mice (Lbr-/-)

   September 26th, 2019 at 6:43pm
Source Publication
Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Falk M, Feodorova Y, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
thymocyte with Lbr-/-
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUWH55N3
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI29KN5A6
131.95m
34.764%
20.323%
44.912%
Experiment
4DNEXQL6QDL7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on thymocyte with Lbr-/- with HindIII
File
Contact List-replicate (pairs)
4DNFI2IK5XAE
71.22m
36.463%
19.523%
44.014%
Experiment
4DNEX87A1599
Bio Rep 2, Tec Rep 1
Dilution Hi-C on thymocyte with Lbr-/- with HindIII
File
Contact List-replicate (pairs)
4DNFIQHF9HIW
60.73m
32.772%
21.261%
45.967%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUWH55N3
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI84R2F4N
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQL6QDL7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on thymocyte with Lbr-/- with HindIII
File
Alignments (bam)
4DNFIGE9C7PJ
171.67m
18.234%
17.67%
22.599%
0.011%
0.062%
Experiment
4DNEX87A1599
Bio Rep 2, Tec Rep 1
Dilution Hi-C on thymocyte with Lbr-/- with HindIII
File
Alignments (bam)
4DNFI86X9ZMZ
159.53m
18.156%
19.074%
24.694%
0.008%
0.056%