ExperimentSetReplicate

ExperimentSet4DNESVAT38RM
released
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DNA Paint on HFF Htert cells with 3 loci

   August 13th, 2018 at 3:50pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:17:65509811-65678200 region, GRCh38:17:38743489-38939529 region, GRCh38:17:30088606-30263568 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:17:65509811-65678200 region targeted by Cy5-labeled BAC
ch02
GRCh38:17:38743489-38939529 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:17:30088606-30263568 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESVAT38RM
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXPMJDAEP
Bio Rep 2, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIRMK7SJE
loci distances (txt)
142.64 kB
Experiment
4DNEXATZO98H
Bio Rep 2, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI5XWM5ZJ
loci distances (txt)
104.78 kB
Experiment
4DNEXEE5GN36
Bio Rep 2, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI6V7U9DO
loci distances (txt)
116.68 kB