ExperimentSetReplicate

ExperimentSet4DNESVW165TO
released
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Replicates of in situ Dnase Hi-C on WTC11 human induced pluripotent stem cells differentiated to cardiac progenitors

   November 18th, 2018 at 6:54pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11 (Tier 1)
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESVW165TO
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI46B52GH
148.81m
25.976%
42.689%
31.335%
Experiment
4DNEX4K24I1K
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIBRMXBXT
52.97m
24.588%
47.889%
27.523%
Experiment
4DNEX31BLR1Y
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIXGBHZXS
95.84m
26.743%
39.814%
33.443%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESVW165TO
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5EYJQNQ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4K24I1K
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFIPFRZURV
115.82m
30.43%
13.291%
7.264%
3.283%
0.166%
Experiment
4DNEX31BLR1Y
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFITEMJXFO
166.48m
13.102%
18.496%
7.611%
3.224%
0.294%