ExperimentSetReplicate

ExperimentSet4DNESVZ6QH33
released
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These are biological replicate in which we performed Hi-C 2.0 on K652 cells.

   June 4th, 2019 at 2:11pm
Source Publication
Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics.
Belaghzal H, Borrman T, et al., Nature genetics 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
K562 (Tier 2)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESVZ6QH33
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIM4G3L5Q
238.82m
59.843%
23.149%
17.008%
Experiment
4DNEXPK1II54
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with HindIII
File
Contact List-replicate (pairs)
4DNFI7SJLVDF
238.82m
59.843%
23.149%
17.008%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESVZ6QH33
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIE7RGTE9
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPK1II54
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with HindIII
File
Alignments (bam)
4DNFI5EQU8O8
363.84m
15.234%
13.493%
5.635%
0.001%
0.174%