ExperimentSetReplicate

ExperimentSet4DNESW1G42GW
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Biological replicates of PolII ChIP-seq on G1E-ER4 cells in late G1 phase

   March 3rd, 2020 at 8:08pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Polr2a mouse protein

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXN52ZUWW
Bio Rep 1, Tec Rep 1
ChIP-seq against Polr2a mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIA5XVH1H
0.5
0.45
10.36m
Experiment
4DNEX2PFDJIU
Bio Rep 2, Tec Rep 1
ChIP-seq against Polr2a mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIJ5AU86C
0.76
0.76
18.14m
Experiment
4DNEXSB4T9DY
Bio Rep 3, Tec Rep 1
ChIP-seq against Polr2a mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFI2636IV6
0.71
0.7
14.46m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESW1G42GW
Multiple Experiments
File
Peaks (bigbed)
4DNFIG1YMWL7
29.54k
1.04
1.13
0.16