ExperimentSetReplicate

ExperimentSet4DNESW54C11P
released
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in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 6 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESW54C11P
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPSS3PYD
72.54m
40.876%
21.882%
37.241%
Experiment
4DNEXN8NDHVR
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI85HSP6M
72.54m
40.876%
21.882%
37.241%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESW54C11P
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQYZXYN4
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXN8NDHVR
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIUF47XO1
131.68m
13.853%
22.97%
8.078%
0.006%
0.288%