ExperimentSetReplicate

ExperimentSet4DNESW7PWWH8
released
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Replicates of ATAC-seq on CRISPR/cas9-modified Patski cells (Del-hinge clone a)

   February 6th, 2018 at 9:58pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
ATAC-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXYD2QQAH
Bio Rep 1, Tec Rep 1
ATAC-seq on Patski
File
Read Positions (bed)
4DNFIF9QU1KW
28.48%
0.83
0.84
120.11m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESW7PWWH8
Multiple Experiments
File
Peaks (bigbed)
4DNFINC23K1S
190.04k
0.0
1.0
0.18