ExperimentSetReplicate

ExperimentSet4DNESWEF2AHT
released
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in situ Hi-C experiment on DKO cells

   September 1st, 2017 at 9:51pm
Source Publication
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.
Yan J, Chen SA, et al., Cell research 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWEF2AHT
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIW175DY7
579.21m
66.767%
17.498%
15.736%
Experiment
4DNEX1UFMPVX
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Contact List-replicate (pairs)
4DNFI224W9FM
579.21m
66.767%
17.498%
15.736%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESWEF2AHT
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI37GAU3L
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1UFMPVX
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Alignments (bam)
4DNFIB3224VP
916.35m
10.298%
23.244%
3.095%
0.154%
0.095%