ExperimentSetReplicate

ExperimentSet4DNESWK53WP1
released

Replicates CUT&RUN experiments on Hffc6 cells using H3K4me2 (Upstate 07-030)

   June 20th, 2019 at 10:09pm

NOTE: Processed files temporarily restricted  


Due to an issue with the 4DN standardized pipeline for CUT&RUN some of the recently released files generated by this pipeline contain additional formatting or may have been incorrectly truncated. This not only interferes with Higlass visualization but may also lead to incorrect interpretation of results. We have restricted access to the files as we work to correct these errors. Please use caution if you have already obtained any of these files and plan to utilize them in your analyses.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me2

32 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSW9W69YZ
Bio Replicate 1
Experiment
4DNEXQA8PP9E
Tech Replicate 1
Pair 1
106.04 MB
25
  Pass
4m
107.48 MB
25
  Pass
4m
Pair 2
20.38 MB
25
  Pass
763.19k
20.63 MB
25
  Pass
763.19k
Pair 3
105.84 MB
25
  Pass
4m
107.39 MB
25
  Pass
4m
Pair 4
17.49 MB
25
  Pass
656.24k
17.66 MB
25
  Pass
656.24k
Biosample
4DNBSYYWU79I
Bio Replicate 2
Experiment
4DNEXFKTSP8G
Tech Replicate 1
Pair 1
105.83 MB
25
  Pass
4m
107.25 MB
25
  Pass
4m
Pair 2
36.29 MB
25
  Pass
1.37m
36.81 MB
25
  Pass
1.37m
Pair 3
105.64 MB
25
  Pass
4m
32.86 MB
25
  Pass
1.25m
Pair 4
107.09 MB
25
  Pass
4m
33.24 MB
25
  Pass
1.25m
Biosample
4DNBSTY9L2Q4
Bio Replicate 3
Experiment
4DNEXTH9H96G
Tech Replicate 1
Pair 1
105.4 MB
25
  Pass
4m
107.21 MB
25
  Pass
4m
Pair 2
31.94 MB
25
  Pass
1.22m
32.47 MB
25
  Pass
1.22m
Pair 3
105.17 MB
25
  Pass
4m
107.02 MB
25
  Pass
4m
Pair 4
30.44 MB
25
  Pass
1.16m
30.96 MB
25
  Pass
1.16m
Biosample
4DNBSAZ76JBZ
Bio Replicate 4
Experiment
4DNEXSDZUV13
Tech Replicate 1
Pair 1
104.75 MB
25
  Pass
4m
106.8 MB
25
  Pass
4m
Pair 2
25.5 MB
25
  Pass
973.29k
25.96 MB
25
  Pass
973.29k
Pair 3
104.51 MB
25
  Pass
4m
106.67 MB
25
  Pass
4m
Pair 4
24.04 MB
25
  Pass
917.42k
24.5 MB
25
  Pass
917.42k