ExperimentSetReplicate

ExperimentSet4DNESWLWNWV8
released
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2 biological replicates of Hi-C on G1E-ER4 cells in mid-G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWLWNWV8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIKGPMCIE
400.47m
57.634%
31.881%
10.485%
Experiment
4DNEXGDR6FZF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIU1X4LHS
191.58m
57.312%
33.188%
9.5%
Experiment
4DNEX9K9WDJX
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIZDV3W7X
208.89m
57.929%
30.683%
11.388%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESWLWNWV8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQM3SAO3
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGDR6FZF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFICP81OJS
309.77m
12.454%
18.249%
2.089%
5.364%
0.088%
Experiment
4DNEX9K9WDJX
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI1F512QY
322.22m
8.712%
20.121%
2.409%
3.93%
0.102%