ExperimentSetReplicate

ExperimentSet4DNESWMNO7NI
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 8th, 2018 at 1:10pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:18:46316193-46486760 region, GRCh38:18:34992711-35151964 region, GRCh38:18:39016717-39206739 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:18:46316193-46486760 region targeted by Alexa Fluor 568-labeled BAC
ch02
GRCh38:18:34992711-35151964 region targeted by Alexa Fluor 488-labeled BAC
ch03
GRCh38:18:39016717-39206739 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESWMNO7NI
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXNXUMSX2
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIPNPCWJN
loci distances (txt)
83.49 kB
Experiment
4DNEX96MM52O
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIJG685RC
loci distances (txt)
80.48 kB
Experiment
4DNEXKJ3FOI1
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI22B43EP
loci distances (txt)
85.26 kB