ExperimentSetReplicate

ExperimentSet4DNESWNF3Y23
released
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2 biological replicates of Hi-C on G1E-ER4 cells in late G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWNF3Y23
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINFUFH1T
476.67m
46.561%
36.234%
17.206%
Experiment
4DNEXT15BABL
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFI459N6LM
227.77m
40.908%
43.87%
15.221%
Experiment
4DNEXUNJYYOW
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIVIMVUT2
248.89m
51.733%
29.245%
19.022%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESWNF3Y23
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIB3Y8ECJ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXT15BABL
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIRU495DS
393.34m
12.312%
21.006%
4.022%
4.752%
0.097%
Experiment
4DNEXUNJYYOW
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIQKTJZC3
383.17m
8.11%
20.435%
2.669%
3.829%
0.109%