ExperimentSetReplicate

ExperimentSet4DNESX6A3WDX
released
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Dilution Hi-C on thymus cells of CD1 mice (wildtype)

   September 26th, 2019 at 6:43pm
Source Publication
Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Falk M, Feodorova Y, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
thymocyte
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESX6A3WDX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOSZGYM5
124.7m
51.125%
20.378%
28.497%
Experiment
4DNEXZP5PEU7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on thymocyte with HindIII
File
Contact List-replicate (pairs)
4DNFI3XI5LRB
59.81m
51.59%
21.157%
27.254%
Experiment
4DNEX3S6GZTP
Bio Rep 2, Tec Rep 1
Dilution Hi-C on thymocyte with HindIII
File
Contact List-replicate (pairs)
4DNFI2SUI5UD
64.89m
50.697%
19.661%
29.643%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESX6A3WDX
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIZQDVOR
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZP5PEU7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on thymocyte with HindIII
File
Alignments (bam)
4DNFIP2G1EUJ
160.81m
20.337%
17.802%
24.654%
0.011%
0.037%
Experiment
4DNEX3S6GZTP
Bio Rep 2, Tec Rep 1
Dilution Hi-C on thymocyte with HindIII
File
Alignments (bam)
4DNFIDUICNGD
166.51m
18.132%
17.969%
24.92%
0.01%
0.039%