ExperimentSetReplicate

ExperimentSet4DNESXNK2AP5
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Replicates of in situ DNase Hi-C on LMNA R225R homozygous clone 38 (corrected.2) hIPSCs differentiated into cardioymyocytes

   February 20th, 2019 at 3:42am
Source Publication
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
Bertero A, Fields PA, et al., The Journal of cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESXNK2AP5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5E4UZ2P
183.72m
18.784%
36.802%
44.413%
Experiment
4DNEXPP7458F
Bio Rep 1, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr with DNaseI
File
Contact List-replicate (pairs)
4DNFIE5GBOWH
87.51m
20.299%
39.616%
40.086%
Experiment
4DNEXLWZ9ZYG
Bio Rep 2, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr with DNaseI
File
Contact List-replicate (pairs)
4DNFIQQDEUN8
96.21m
17.407%
34.244%
48.349%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESXNK2AP5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5SY8QBO
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPP7458F
Bio Rep 1, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr with DNaseI
File
Alignments (bam)
4DNFISA1SWYO
144.27m
12.635%
18.751%
3.834%
4.126%
0.429%
Experiment
4DNEXLWZ9ZYG
Bio Rep 2, Tec Rep 1
DNase Hi-C on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr with DNaseI
File
Alignments (bam)
4DNFIPEDTQF8
155.78m
12.064%
19.279%
3.188%
3.708%
0.491%