ExperimentSetReplicate

ExperimentSet4DNESY859VLG
released

Hi-C on HFF cells grown on beads with NcoI

   September 7th, 2017 at 8:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: NcoI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESY859VLG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIL8WH9W9
234.83m
58.683%
21.634%
19.683%
Experiment
4DNEXPV7KB6G
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with NcoI
File
Contact List-replicate (pairs)
4DNFIK433OI5
234.83m
58.683%
21.634%
19.683%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESY859VLG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIW9ANJG4
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPV7KB6G
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with NcoI
File
Alignments (bam)
4DNFIZKM6ZUN
392.48m
12.786%
18.226%
9.151%
0.004%
0.089%