ExperimentSetReplicate

ExperimentSet4DNESYM9B38A
released
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Replicates of ATAC-seq on RUES2 stem cells

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX3DFQ7PI
Bio Rep 1, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIYJF3IVW
34.63%
0.97
0.98
23.62m
Experiment
4DNEX4BQR2UZ
Bio Rep 2, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFILO55UAW
44.85%
0.97
0.97
36.61m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESYM9B38A
Multiple Experiments
File
Peaks (bigbed)
4DNFIH99SZ5Z
215.19k
1.03
1.23
0.27