ExperimentSetReplicate

ExperimentSet4DNESYTIFTEE
released
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HiC experiment done on SK-N-MC

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
SK-N-MC
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYTIFTEE
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIXC4LZNP
206.91m
16.455%
16.943%
66.602%
Experiment
4DNEX4USO4XW
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-MC with HindIII
File
Contact List-replicate (pairs)
4DNFIDQOLVA1
90.22m
12.394%
15.855%
71.75%
Experiment
4DNEXGBVIBAD
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-N-MC with HindIII
File
Contact List-replicate (pairs)
4DNFILS6PDR3
116.69m
19.595%
17.783%
62.622%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESYTIFTEE
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQI8SFNE
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4USO4XW
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-MC with HindIII
File
Alignments (bam)
4DNFITJ32QD7
135.49m
15.862%
14.759%
2.79%
0.002%
0.202%
Experiment
4DNEXGBVIBAD
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-N-MC with HindIII
File
Alignments (bam)
4DNFICFIR2BM
178.32m
15.551%
14.583%
4.428%
0.001%
0.186%