ExperimentSet4DNESYTUBW2E
released
July 9th, 2020 at 10:45pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021
Note: Superseding Item - 4DNESYTUBW2E
This experiment set is replacing 4DNES78Y8Y5K. The experiment type was initially submitted as "Dilution Hi-C" but it was subsequently determined that the correct experiment type is "in situ Hi-C". In order to correct this mistake, the old Experiment Set and associated Experiment have been replaced with new ones of the correct type. This correction does not affect any file or file processing pipeline associated with this data set. Both raw and processed files linked to this experiment or the associated items remain unchanged.
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
stem cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: HindIII
8 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details