ExperimentSetReplicate

ExperimentSet4DNESYUYFD6H
released
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Dilution Hi-C experiment on GM19238

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM19238
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYUYFD6H
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUO8KG4O
464.03m
40.913%
18.651%
40.436%
Experiment
4DNEXPUUL5OD
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19238 with HindIII
File
Contact List-replicate (pairs)
4DNFIXXM1IBQ
294.53m
39.531%
18.84%
41.629%
Experiment
4DNEXPCS5JFS
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19238 with HindIII
File
Contact List-replicate (pairs)
4DNFI654OVO4
169.5m
43.314%
18.325%
38.361%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESYUYFD6H
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIRNP38T
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPUUL5OD
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19238 with HindIII
File
Alignments (bam)
4DNFIXEQ19YS
459.97m
10.999%
9.34%
12.271%
3.358%
0.234%
Experiment
4DNEXPCS5JFS
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19238 with HindIII
File
Alignments (bam)
4DNFIU1XW8G9
259.55m
11.172%
9.191%
11.1%
3.231%
0.22%