ExperimentSetReplicate

ExperimentSet4DNESYX5MMAP
released
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HiC experiment done on SJCRH30

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
SJCRH30
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYX5MMAP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIU22GSZG
16.03m
19.212%
18.847%
61.941%
Experiment
4DNEXPZELNYN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SJCRH30 with HindIII
File
Contact List-replicate (pairs)
4DNFIRYYHEUI
9.55m
21.102%
16.889%
62.009%
Experiment
4DNEXLDHA6ZV
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SJCRH30 with HindIII
File
Contact List-replicate (pairs)
4DNFI6VABEIW
6.48m
16.426%
21.734%
61.84%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESYX5MMAP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIS3R5PRY
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPZELNYN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SJCRH30 with HindIII
File
Alignments (bam)
4DNFI766E6FZ
103.48m
77.675%
11.949%
0.855%
0.29%
0.023%
Experiment
4DNEXLDHA6ZV
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SJCRH30 with HindIII
File
Alignments (bam)
4DNFI71R9ARR
48.76m
72.239%
12.759%
1.701%
0.011%
0.032%