ExperimentSetReplicate

ExperimentSet4DNESZFHB53P
released
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Replicates of in situ Dnase Hi-C on fetal heart samples

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESZFHB53P
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI53L5LSY
238.39m
30.754%
36.842%
32.404%
Experiment
4DNEX778XE4J
Bio Rep 1, Tec Rep 1
DNase Hi-C on heart with DNaseI
File
Contact List-replicate (pairs)
4DNFI85DU7IM
104.84m
32.245%
35.933%
31.822%
Experiment
4DNEXEKTHDKQ
Bio Rep 2, Tec Rep 1
DNase Hi-C on heart with DNaseI
File
Contact List-replicate (pairs)
4DNFI6ZBWB81
133.55m
29.584%
37.555%
32.861%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESZFHB53P
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIAL6BHR2
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX778XE4J
Bio Rep 1, Tec Rep 1
DNase Hi-C on heart with DNaseI
File
Alignments (bam)
4DNFIABRLVHZ
209.94m
14.67%
17.905%
12.713%
4.774%
0.31%
Experiment
4DNEXEKTHDKQ
Bio Rep 2, Tec Rep 1
DNase Hi-C on heart with DNaseI
File
Alignments (bam)
4DNFI2P1OBXJ
279.4m
16.905%
15.865%
13.774%
5.656%
0.235%