ExperimentSetReplicate

ExperimentSet4DNESZIREYB8
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Replicates of dilution Hi-C on GM18508

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM18508
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESZIREYB8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPZKN1H7
378.32m
37.834%
20.796%
41.37%
Experiment
4DNEX9K6IIC1
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18508 with HindIII
File
Contact List-replicate (pairs)
4DNFI7Q5IL4O
165.69m
31.985%
27.234%
40.781%
Experiment
4DNEX9IKMOGL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18508 with HindIII
File
Contact List-replicate (pairs)
4DNFIP4L3MAE
212.63m
42.392%
15.779%
41.829%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESZIREYB8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI6SJZVXZ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX9K6IIC1
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18508 with HindIII
File
Alignments (bam)
4DNFIPAJWW7L
259.86m
15.83%
8.107%
7.546%
4.754%
0.28%
Experiment
4DNEX9IKMOGL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18508 with HindIII
File
Alignments (bam)
4DNFIQPPWR9L
337.79m
11.607%
7.499%
12.35%
5.596%
0.336%