Experiment Set

4DNESD7L6X1J
released
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in situ Hi-C experiment on DKO cells - Neural Progenitor Cell differentiation

   September 1st, 2017 at 9:51pm
Source Publication
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.
Yan J, Chen SA, et al., Cell research 2018

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX1UFMPVX
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
4DNFIB3224VP
alignments (bam)
103.13 GB
File
4DNFI224W9FM
contact list-replicate (pairs)
11.18 GB
Experiment
4DNEXG7NC3PQ
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
4DNFIS8UK1P1
alignments (bam)
126.47 GB
File
4DNFILWV3C1I
contact list-replicate (pairs)
13.74 GB
Experiment
4DNEXKGB5PMS
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
4DNFI8SFPK6F
alignments (bam)
134.1 GB
File
4DNFIQXWVVB6
contact list-replicate (pairs)
13.15 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1UFMPVX
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Alignments (bam)
4DNFIB3224VP
916.35m
10.298%
23.244%
3.095%
0.154%
0.095%
Experiment
4DNEXG7NC3PQ
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Alignments (bam)
4DNFIS8UK1P1
1.13 billion
8.695%
23.873%
3.512%
0.429%
0.128%
Experiment
4DNEXKGB5PMS
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Alignments (bam)
4DNFI8SFPK6F
1.15 billion
12.693%
23.352%
3.471%
0.191%
0.087%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEX1UFMPVX
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Contact List-replicate (pairs)
4DNFI224W9FM
579.21m
66.767%
17.498%
15.736%
Experiment
4DNEXG7NC3PQ
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Contact List-replicate (pairs)
4DNFILWV3C1I
717.83m
59.237%
24.578%
16.184%
Experiment
4DNEXKGB5PMS
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Contact List-replicate (pairs)
4DNFIQXWVVB6
693.63m
59.116%
18.486%
22.398%