Experiment Set

4DNESS1UDIC5
released
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in situ Hi-C experiment on E14 cells - Neural Progenitor Cell differentiation

   September 1st, 2017 at 9:51pm
Source Publication
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.
Yan J, Chen SA, et al., Cell research 2018

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQKII593
in situ Hi-C on ES-E14 with MboI
File
4DNFIW65CBMS
alignments (bam)
147.33 GB
File
4DNFIT57JYMU
contact list-replicate (pairs)
15.6 GB
Experiment
4DNEXOF1VUK3
in situ Hi-C on ES-E14 with MboI
File
4DNFIN93AZP1
alignments (bam)
114.63 GB
File
4DNFIHTXJC8B
contact list-replicate (pairs)
11.03 GB
Experiment
4DNEX92LLVRW
in situ Hi-C on ES-E14 with MboI
File
4DNFIYA7WRAM
alignments (bam)
120.56 GB
File
4DNFIHCQLL2H
contact list-replicate (pairs)
10.76 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQKII593
in situ Hi-C on ES-E14 with MboI
File
Alignments (bam)
4DNFIW65CBMS
1.31 billion
9.424%
24.035%
4.184%
0.418%
0.128%
Experiment
4DNEXOF1VUK3
in situ Hi-C on ES-E14 with MboI
File
Alignments (bam)
4DNFIN93AZP1
1.04 billion
9.896%
24.429%
9.857%
0.421%
0.118%
Experiment
4DNEX92LLVRW
in situ Hi-C on ES-E14 with MboI
File
Alignments (bam)
4DNFIYA7WRAM
992.42m
13.98%
25.282%
3.408%
0.456%
0.108%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXQKII593
in situ Hi-C on ES-E14 with MboI
File
Contact List-replicate (pairs)
4DNFIT57JYMU
812.43m
65.44%
19.046%
15.513%
Experiment
4DNEXOF1VUK3
in situ Hi-C on ES-E14 with MboI
File
Contact List-replicate (pairs)
4DNFIHTXJC8B
576.23m
56.087%
29.117%
14.796%
Experiment
4DNEX92LLVRW
in situ Hi-C on ES-E14 with MboI
File
Contact List-replicate (pairs)
4DNFIHCQLL2H
564.42m
59.422%
21.204%
19.375%