Experiment Set

4DNESTF4642T
released
View JSON

Custom Set: CH12 mouse lymphoblast dilution Hi-C

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12.LX
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXZKNI8A6
Dilution Hi-C on CH12.LX with HindIII
File
4DNFII4HZ6DV
alignments (bam)
8.63 GB
File
4DNFIFUA1MEO
contact list-replicate (pairs)
724.3 MB
Experiment
4DNEXWL6AZ1B
Dilution Hi-C on CH12.LX with HindIII
File
4DNFIMYEBMKQ
alignments (bam)
15.41 GB
File
4DNFIDQHUP2X
contact list-replicate (pairs)
1.32 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZKNI8A6
Dilution Hi-C on CH12.LX with HindIII
File
Alignments (bam)
4DNFII4HZ6DV
52.82m
4.557%
21.067%
0.641%
2.252%
0.218%
Experiment
4DNEXWL6AZ1B
Dilution Hi-C on CH12.LX with HindIII
File
Alignments (bam)
4DNFIMYEBMKQ
97.43m
4.047%
17.879%
0.704%
1.679%
0.141%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXZKNI8A6
Dilution Hi-C on CH12.LX with HindIII
File
Contact List-replicate (pairs)
4DNFIFUA1MEO
37.75m
20.692%
24.41%
54.898%
Experiment
4DNEXWL6AZ1B
Dilution Hi-C on CH12.LX with HindIII
File
Contact List-replicate (pairs)
4DNFIDQHUP2X
73.75m
27.076%
38.232%
34.692%