{"lab": {"status": "current", "@id": "/labs/wei-xie-lab/", "uuid": "8c95312f-afa0-49ee-9d3c-e30849c74e50", "@type": ["Lab", "Item"], "display_title": "Wei Xie, TSINGHUA", "title": "Wei Xie, TSINGHUA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.8c95312f-afa0-49ee-9d3c-e30849c74e50"]}}, "award": {"display_title": "EXTERNAL AWARD", "name": "external-award", "@type": ["Award", "Item"], "status": "current", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "project": "External", "@id": "/awards/external-award/", "center_title": "External", "center": "External", "description": "Funding source is from outside 4DN.", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "b2b2c0d6da27120b8ce18abc52338cc7", "status": "released", "accession": "4DNFI2H23JBK", "file_size": 608529117, "file_type": "contact matrix", "description": "This is an output file of the Hi-C processing pipeline", "file_format": {"display_title": "mcool", "@id": "/file-formats/mcool/", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "file_format": "mcool", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "higlass_uid": "eb860420-1b84-4c29-9b6f-08a141be75b1", "date_created": "2020-01-24T04:01:11.991365+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-21T08:49:25.032479+00:00"}, "public_release": "2020-02-07", "quality_metric": {"uuid": "38ffba60-e112-43fc-b20c-a87808339d9b", "status": "released", "@id": "/quality-metrics-mcool/38ffba60-e112-43fc-b20c-a87808339d9b/", "@type": ["QualityMetricMcool", "QualityMetric", "Item"], "display_title": "QualityMetricMcool from 2021-05-21", "quality_metric_summary": [{"title": "Failed Balancing", "value": "None", "tooltip": "Resolutions where balancing failed", "numberType": "string"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "3", "static_content": [{"content": {"@id": "/higlass-view-configs/8e47cde0-7a1d-47dd-a5aa-8297b965a3fd/", "lab": {"status": "current", "uuid": "8c95312f-afa0-49ee-9d3c-e30849c74e50", "@id": "/labs/wei-xie-lab/", "display_title": "Wei Xie, TSINGHUA", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.8c95312f-afa0-49ee-9d3c-e30849c74e50"]}}, "description": "", "name": "8e47cde0-7a1d-47dd-a5aa-8297b965a3fd", "award": {"@id": "/awards/external-award/", "display_title": "EXTERNAL AWARD", "status": "current", "@type": ["Award", "Item"], "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "display_title": "4DNFI2H23JBK - contact matrix for cerebral cortex in situ Hi-C MboI", "title": "4DNFI2H23JBK - contact matrix for cerebral cortex in situ Hi-C MboI", "uuid": "8e47cde0-7a1d-47dd-a5aa-8297b965a3fd", "filetype": "HiglassViewConfig", "contributing_labs": [], "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}, "location": "tab:higlass", "description": "auto_generated_higlass_view_config"}], "genome_assembly": "GRCm38", "project_release": "2020-02-07", "source_experiments": ["95a283f2-e057-4363-a181-939150fa2584", "a33dd5ef-7512-4427-b6d6-cc6ca28ffa96"], "file_classification": "processed file", "@id": "/files-processed/4DNFI2H23JBK/", "@type": ["FileProcessed", "File", "Item"], "uuid": "bfa5376c-2786-41e5-8c09-791d0781ec71", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFI2H23JBK.mcool", "external_references": [], "experiments": [], "file_type_detailed": "contact matrix (mcool)", "track_and_facet_info": {"dataset": "sisHi-C during early embryonic development", "condition": "Cortex", "experimental_lab": "Wei Xie, TSINGHUA", "replicate_info": "merged replicates", "experiment_bucket": "processed file", "experiment_type": "in situ Hi-C", "assay_info": "MboI", "biosource_name": "cerebral cortex", "lab_name": "Wei Xie, TSINGHUA", "track_title": "contact matrix for cerebral cortex in situ Hi-C MboI"}, "title": "4DNFI2H23JBK", "href": "/files-processed/4DNFI2H23JBK/@@download/4DNFI2H23JBK.mcool", "upload_key": "bfa5376c-2786-41e5-8c09-791d0781ec71/4DNFI2H23JBK.mcool", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bfa5376c-2786-41e5-8c09-791d0781ec71/4DNFI2H23JBK.mcool", "tsv_notes": "", "workflow_run_inputs": [{"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "compartments-caller v1.2 run 2020-12-11 16:54:26.711439", "uuid": "02ad642a-7964-4bad-9c58-16753f576cb5", "status": "released", "@id": "/workflow-runs-awsem/02ad642a-7964-4bad-9c58-16753f576cb5/", "input_files": [{"workflow_argument_name": "mcoolfile", "value": {"status": "released", "display_title": "4DNFI2H23JBK.mcool", "uuid": "bfa5376c-2786-41e5-8c09-791d0781ec71", "accession": "4DNFI2H23JBK", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI2H23JBK/", "file_format": {"status": "released", "file_format": "mcool", "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "display_title": "mcool", "@type": ["FileFormat", "Item"], "@id": "/file-formats/mcool/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "reference_track", "value": {"status": "released", "display_title": "4DNFIOFXJOUA.bedGraph.gz", "uuid": "a7cb689e-65b4-4efa-a3aa-a5fc59b849b2", "accession": "4DNFIOFXJOUA", "filename": "mm10_nuc_250kb_bps.bedGraph.gz", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIOFXJOUA/", "file_format": {"status": "released", "file_format": "bg", "uuid": "d1312212-218e-4f61-aaf0-91f226248b2c", "display_title": "bg", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bg/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "bwfile", "value": {"display_title": "4DNFIB16WAKX.bw", "uuid": "e2da2096-3913-41a5-945e-15dcf6c0a8a2", "status": "released", "@id": "/files-processed/4DNFIB16WAKX/", "accession": "4DNFIB16WAKX", "@type": ["FileProcessed", "File", "Item"], "file_format": {"@type": ["FileFormat", "Item"], "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/bw/", "display_title": "bw", "file_format": "bw", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Getting compartments signals from mcool files", "display_title": "Getting compartments signals from mcool files - 4DNWCCPLMV01", "uuid": "d07fa5d4-8721-403e-89b5-e8f323ac9ece", "@type": ["Workflow", "Item"], "status": "released", "@id": "/workflows/4DNWCCPLMV01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "mcoolQC v1 run 2021-05-21 03:52:30.143709", "uuid": "11aed625-8d94-4531-b642-3b238695797d", "status": "released", "@id": "/workflow-runs-awsem/11aed625-8d94-4531-b642-3b238695797d/", "input_files": [{"workflow_argument_name": "mcoolfile", "value": {"status": "released", "display_title": "4DNFI2H23JBK.mcool", "uuid": "bfa5376c-2786-41e5-8c09-791d0781ec71", "accession": "4DNFI2H23JBK", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI2H23JBK/", "file_format": {"status": "released", "file_format": "mcool", "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "display_title": "mcool", "@type": ["FileFormat", "Item"], "@id": "/file-formats/mcool/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "mcool_qc", "value_qc": {"display_title": "QualityMetricMcool from 2021-05-21", "status": "released", "@type": ["QualityMetricMcool", "QualityMetric", "Item"], "uuid": "38ffba60-e112-43fc-b20c-a87808339d9b", "overall_quality_status": "PASS", "@id": "/quality-metrics-mcool/38ffba60-e112-43fc-b20c-a87808339d9b/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Quality metrics for mcool files", "display_title": "Quality metrics for mcool files - 4DNWFXKEC8OX", "uuid": "0bf9f47a-dec1-4324-9b41-fa183880a7db", "@type": ["Workflow", "Item"], "status": "released", "@id": "/workflows/4DNWFXKEC8OX/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"@id": "/workflow-runs-awsem/1606f70b-083c-4591-8c07-ece21c0425ea/", "display_title": "hi-c-processing-pairs 0.2.7 run 2020-01-24 04:01:14.101596", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "1606f70b-083c-4591-8c07-ece21c0425ea", "status": "released", "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"accession": "4DNFIZ51VHLF", "uuid": "3efd3547-8720-43e7-8ef1-f7b9c116a1c9", "@id": "/files-processed/4DNFIZ51VHLF/", "status": "released", "display_title": "4DNFIZ51VHLF.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "file_format": {"@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "hic", "value": {"accession": "4DNFII3JV8I1", "uuid": "268b7d52-9655-474c-9467-8ba31bb2195c", "@id": "/files-processed/4DNFII3JV8I1/", "status": "released", "display_title": "4DNFII3JV8I1.hic", "@type": ["FileProcessed", "File", "Item"], "file_format": {"@id": "/file-formats/hic/", "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "file_format": "hic", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "hic", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "mcool", "value": {"accession": "4DNFI2H23JBK", "uuid": "bfa5376c-2786-41e5-8c09-791d0781ec71", "@id": "/files-processed/4DNFI2H23JBK/", "status": "released", "display_title": "4DNFI2H23JBK.mcool", "@type": ["FileProcessed", "File", "Item"], "file_format": {"@id": "/file-formats/mcool/", "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "file_format": "mcool", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "mcool", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"status": "released", "accession": "4DNFI3UBJ3HZ", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "filename": "mm10.mainonly.chrom.sizes", "@id": "/files-reference/4DNFI3UBJ3HZ/", "file_format": {"file_format": "chromsizes", "@id": "/file-formats/chromsizes/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "accession": "4DNFIA8HVQYQ", "uuid": "f71cfb48-3533-4525-95a9-a6b4e98288a8", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIA8HVQYQ.pairs.gz", "@id": "/files-processed/4DNFIA8HVQYQ/", "file_format": {"file_format": "pairs", "@id": "/file-formats/pairs/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "accession": "4DNFIQW9S38C", "uuid": "c7dc4b83-8c4a-48fe-931e-50a842f2bd73", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIQW9S38C.pairs.gz", "@id": "/files-processed/4DNFIQW9S38C/", "file_format": {"file_format": "pairs", "@id": "/file-formats/pairs/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"status": "released", "accession": "4DNFIONK4G14", "uuid": "cb3c293b-b5fe-4f47-9373-a29399ea1edc", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFIONK4G14.txt", "filename": "mm10_MboI.txt", "@id": "/files-reference/4DNFIONK4G14/", "file_format": {"file_format": "juicer_format_restriction_site_file", "@id": "/file-formats/juicer_format_restriction_site_file/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "juicer_format_restriction_site_file", "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7 - 4DNWF2YBHXQM", "@id": "/workflows/4DNWF2YBHXQM/", "uuid": "23bd6d73-4190-496d-837c-21bcdb3802ed", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [{"display_title": "4DNESUQT299T", "@id": "/experiment-set-replicates/4DNESUQT299T/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "status": "released", "accession": "4DNESUQT299T", "uuid": "7dfac163-ccb5-4277-a773-097c2d0a5f74", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-01-25T04:59:53.983849+00:00"}}], "source_experiment_sets": [{"status": "released", "@id": "/experiment-set-replicates/4DNESUQT299T/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "7dfac163-ccb5-4277-a773-097c2d0a5f74", "display_title": "4DNESUQT299T", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiment-set-replicates/4DNESUQT299T/", "embedded_path": "experiment_sets.last_modified", "item": {"date_modified": "2021-01-25T04:59:53.983849+00:00"}}, {"parent": "/files-processed/4DNFI2H23JBK/", "embedded_path": "last_modified", "item": {"date_modified": "2021-05-21T08:49:25.032479+00:00"}}]}, "validation-errors": []}