Below is a summary table of the microscopy datasets that are publicly available on the 4DN data portal. Many of these datasets don't include the raw image files; this is because the submitters in many cases have deemed the processed data to be much more useful to collaborators and outside users than raw images. If you are interested in obtaining raw images or any other type of file that isn't available on the data portal, please contact the data generating lab.
Sample Image
Dataset
Experiment Type
Publication
Biosource
Lab
Data File Availability
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
5 Experiment Sets
5 Experiment Sets
Bing Ren
UCSD
UCSD
Raw: 0
Processed: 7
Processed: 7
RNA FISH for TERRA in U2OS
2 Experiment Sets
(2 Experiment Sets with Raw Files)
2 Experiment Sets
(2 Experiment Sets with Raw Files)
Huaiying Zhang
CMU
CMU
Raw: 12
Processed: 6
Processed: 6
SPT for GAGA transcription factor
30 Experiment Sets
(4 Experiment Sets with Raw Files)
30 Experiment Sets
(4 Experiment Sets with Raw Files)
Carl Wu
JHU
JHU
Raw: 345
Processed: 60
Processed: 60
Synthetic condensation of tudor domain
13 Experiment Sets
(13 Experiment Sets with Raw Files)
13 Experiment Sets
(13 Experiment Sets with Raw Files)
Karla Neugebauer
YALE
YALE
Raw: 1341
Processed: 1354
Processed: 1354
Live imaging of chromatin topology and transcription
3 Experiment Sets
(3 Experiment Sets with Raw Files)
3 Experiment Sets
(3 Experiment Sets with Raw Files)
Thomas Gregor
PRINCETON
PRINCETON
Raw: 3
Processed: 3
Processed: 3
SPT on U2OS cells
8 Experiment Sets
(1 Experiment Set with Raw Files)
8 Experiment Sets
(1 Experiment Set with Raw Files)
Robert Coleman
EINSTEIN
EINSTEIN
Raw: 37
Processed: 169
Processed: 169
Nascent Transcript RNA FISH - Flavopiridol treatment
8 Experiment Sets
8 Experiment Sets
Arjun Raj
UPENN
UPENN
Raw: 0
Processed: 112
Processed: 112
Nascent Transcript RNA FISH - Triptolide treatment
4 Experiment Sets
4 Experiment Sets
Arjun Raj
UPENN
UPENN
Raw: 0
Processed: 60
Processed: 60
Nascent Transcript RNA FISH +/- 4h GATA1 induction
6 Experiment Sets
6 Experiment Sets
Arjun Raj
UPENN
UPENN
Raw: 0
Processed: 24
Processed: 24
Nascent Transcript RNA FISH +/- 13h GATA1 induction
12 Experiment Sets
12 Experiment Sets
Arjun Raj
UPENN
UPENN
Raw: 0
Processed: 84
Processed: 84
SPT on U2OS cells for Spot-On analysis
45 Experiment Sets
(1 Experiment Set with Raw Files)
45 Experiment Sets
(1 Experiment Set with Raw Files)
Xavier Darzacq
Berkeley
Berkeley
Raw: 19
Processed: 45
Processed: 45
Dual color smFISH on fruit fly embryo
(nuclear cycle 13)
6 Experiment Sets
(1 Experiment Set with Raw Files)
(nuclear cycle 13)
6 Experiment Sets
(1 Experiment Set with Raw Files)
Thomas Gregor
PRINCETON
PRINCETON
Raw: 54
Processed: 148
Processed: 148
Immunofluorescence on
synchronized HeLa cells
135 Experiment Sets
synchronized HeLa cells
135 Experiment Sets
Job Dekker
UMMS
UMMS
Raw: 1335
Processed: 135
Processed: 135
DNA FISH on Chr1
52 Experiment Sets
(5 Experiment Sets with Raw Files)
52 Experiment Sets
(5 Experiment Sets with Raw Files)
Tom Misteli
NCI
NCI
Raw: 600
Processed: 272
Processed: 272