{"ID": "doi:10.1016/j.cell.2018.05.024", "aka": "https://www.biorxiv.org/content/early/2017/11/18/219683", "lab": {"status": "current", "display_title": "Mitchell Guttman, CALTECH", "title": "Mitchell Guttman, CALTECH", "@type": ["Lab", "Item"], "uuid": "c17e88b5-912a-496a-acc7-28dd71215a7d", "@id": "/labs/mitchell-guttman-lab/", "correspondence": [{"contact_email": "bWd1dHRtYW5AY2FsdGVjaC5lZHU=", "@id": "/users/ac3920c8-caa6-444b-be8a-48b52a1dcb3e/", "display_title": "Mitchell Guttman"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.c17e88b5-912a-496a-acc7-28dd71215a7d"]}, "pi": {"error": "no view permissions"}}, "url": "https://www.ncbi.nlm.nih.gov/pubmed/29887377", "award": {"description": "NT: An important factor in the control of gene regulation is the 3-dimensional organization of the nucleus, which is dynamically assembled and regulated in different cellular states. Yet, how this nuclear organization is established and how it dynamically changes across cell states is largely unknown. Recently, several nuclear- retained long non-coding RNAs (lncRNAs) have been shown to be important for shaping 3-dimensional genome organization. It is currently unknown how many of the thousands of chromatin-associated lncRNAs may similarly be important for shaping nuclear organization. The main challenge in addressing this question is that we currently lack the tools to comprehensively integrate RNA into our understanding of genome organization. Current genome-wide methods for mapping RNA-DNA interactions can only map a single RNA at a time, do not provide information about the 3-dimensional interaction of their targets, provide an ensemble view derived from millions of cells, and provide an aggregate picture across all RNA molecules, rather than single molecule resolution of RNA localization in the nucleus. Here, we aim to develop a novel approach to enable comprehensive single molecule mapping of the 3-dimensional DNA targets of all RNA molecules within thousands of single nuclei. First, we will a develop a novel genome-wide sequencing method that will enable the generation of comprehensive single molecule maps of the 3-dimensional DNA targets of all RNA molecules in the nucleus (Aim 1). Next, we will develop novel microfluidic devices that will enable the measurement of RNA-DNA nuclear compartments in hundreds to thousands of individual nuclei (Aim 2). Finally, we will extend this technology to study the single cell temporal dynamics of RNA-DNA interactions across cellular reprogramming and functionally validate these maps by testing the role of several identified RNAs in nuclear organization (Aim 3). These methods will overcome a major barrier by enabling, for the first time, comprehensive exploration of the role of nuclear-retained RNAs in shaping nuclear structure. Furthermore, these methods will provide transformative tools for studying nuclear structure - beyond the immediate questions explored in this proposal; we expect that these tools will be generally applicable to many additional questions for understanding nuclear structure in single cells.", "name": "1U01HL130007-01", "@type": ["Award", "Item"], "center_title": "NT - Guttman", "status": "current", "display_title": "NOVEL TOOLS TO COMPREHENSIVELY MAP DYNAMIC ORGANIZATION OF RNA AND DNA IN HIGHER-ORDER NUCLEAR STRUCTURES WITHIN SINGLE CELLS", "@id": "/awards/1U01HL130007-01/", "project": "4DN", "uuid": "8a9d6db4-37eb-488e-828c-d90f3ab348f6", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.", "status": "current", "aliases": ["4dn-dcic-lab:quinodoz-etal-sprite-cell2018"], "authors": ["Quinodoz SA", "Ollikainen N", "Tabak B", "Palla A", "Schmidt JM", "Detmar E", "Lai MM", "Shishkin AA", "Bhat P", "Takei Y", "Trinh V", "Aznauryan E", "Russell P", "Cheng C", "Jovanovic M", "Chow A", "Cai L", "McDonel P", "Garber M", "Guttman M"], "journal": "Cell", "abstract": "Eukaryotic genomes are packaged into a 3-dimensional structure in the nucleus. Current methods for studying genome-wide structure are based on proximity ligation. However, this approach can fail to detect known structures, such as interactions with nuclear bodies, because these DNA regions can be too far apart  to directly ligate. Accordingly, our overall understanding of genome organization remains incomplete. Here, we develop split-pool recognition of interactions by tag extension (SPRITE), a method that enables genome-wide detection of higher-order interactions within the nucleus. Using SPRITE, we recapitulate known structures identified by proximity ligation and identify additional interactions  occurring across larger distances, including two hubs of inter-chromosomal interactions that are arranged around the nucleolus and nuclear speckles. We show that a substantial fraction of the genome exhibits preferential organization relative to these nuclear bodies. Our results generate a global model whereby nuclear bodies act as inter-chromosomal hubs that shape the overall packaging of  DNA in the nucleus.", "categories": ["technology development"], "date_created": "2018-10-02T17:29:03.431682+00:00", "published_by": "4DN", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2018-12-03T21:05:15.012884+00:00"}, "date_published": "2018-06-07", "public_release": "2018-10-02", "schema_version": "2", "static_content": [{"content": {"name": "quinodoz-etal.main-summary", "@type": ["StaticSection", "UserContent", "Item"], "award": {"display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@id": "/awards/1U01CA200059-01/", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "options": {"filetype": "html", "collapsible": false, "default_open": true}, "lab": {"@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "uuid": "cd605246-3d70-44b2-aba0-c6acd6b5caf1", "content": "<b> Technology Development: SPRITE </b>\n\n<div style=\"float: right\">\n<a href=\"https://s3.amazonaws.com/4dn-dcic-public/static-pages/InfoBoxes/SPRITE_figA_Original.png\" target=\"_blank\">\n<img style=\"width: 370px; margin-left: 10px;\" src=\"https://s3.amazonaws.com/4dn-dcic-public/static-pages/InfoBoxes/SPRITE_figA_Original.png\" />\n</a>\n<br/><br/>\n      <em>Image source: Quinodoz et. al. Cell 2018, Figure 1A</em>\n</div>\n<p>\nSPRITE is a method to detect and quantify genome-wide higher-order interactions that occur simultaneously within the same nucleus. It was first published in 2018, and it aims to address certain limitations of proximity ligation and imaging methods. Compared to proximity ligation methods, this technique does not depend on the ligation of spatially close DNA fragments; therefore, it can detect interactions occurring across larger distances in the genome. Additionally, unlike both methods that can only capture simultaneous interactions between a small number of genomic regions (2-3), this technique is able to capture simultaneous interactions between a larger number of genomic regions.\n</p>\n<p>\nThe protocol involves cross-linking the cells to form links between physically adjacent DNA regions and other interacting molecules such as RNA and proteins. Then, the cells are lysed, and a restriction enzyme is used to digest the chromatin into multiple fragments. The cross-linked complexes are coupled to magnetic beads. A split-pool tagging strategy is performed that consists of splitting the cross-linked complexes across a 96 well plate, and ligating a tag sequence unique to each well to each molecule. The wells are then pooled and this process is repeated several times. The molecules located in the same complex will stick together throughout the entire split-pool process, resulting in them having the same barcode combination at the end, while the molecules located in other complexes will have their own distinct barcode combinations. The molecules are sequenced, and all the reads containing the same unique barcode combination are grouped together into a cluster. Initial processing results in the generation of a clusters file where each cluster occupies one line that includes the barcode name and genomic alignments of that cluster. This can be used for additional analysis and to create visualizations.\n\nSee <a href=\"https://www.sciencedirect.com/science/article/pii/S0092867418306366?via%3Dihub\">Quinodoz et. al. Cell 2018</a> for more details.\n</p>", "display_title": "Project Summary", "title": "Project Summary", "status": "released", "@id": "/static-sections/cd605246-3d70-44b2-aba0-c6acd6b5caf1/", "filetype": "html", "contributing_labs": [{"@type": ["Lab", "Item"], "@id": "/labs/mitchell-guttman-lab/", "display_title": "Mitchell Guttman, CALTECH", "uuid": "c17e88b5-912a-496a-acc7-28dd71215a7d", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.c17e88b5-912a-496a-acc7-28dd71215a7d"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "userid.e2324f87-0625-4bbc-803b-d47677aebe08"]}}, "location": "tab:overview"}, {"content": {"name": "quinodoz-etal-table2", "@type": ["StaticSection", "UserContent", "Item"], "award": {"display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@id": "/awards/1U01CA200059-01/", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "options": {"filetype": "html", "collapsible": false, "default_open": true}, "lab": {"@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "uuid": "2a4b8872-6318-4ef4-bac4-75ea305db0d3", "content": "<style>\ntable, th, td {\n    border: 1px solid #ddd;\n}\n</style>\n\n<table style=\"width:100%\">\n  <thead>\n    <tr>\n      <th style=\"text-align:left; padding:10px\">Purpose</th>\n      <th align=\"center\">Accession</th>\n      <th>Raw Files</th>\n      <th>Processed Files</th>\n      <th>Visualization</th>\n    </tr>\n  </thead>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Human DNA SPRITE (GM12878)</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNESI1U7ZW9/\">4DNESI1U7ZW9</a></td>\n    <td style=\"text-align:left; padding:10px\">22 PE fastq files</td>\n    <td style=\"text-align:left; padding:10px\">1 combined cluster file</td>\n    <td style=\"text-align:left; padding:10px\">1 mcool pairwise contact matrix<br>(2-10 read clusters)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Mouse DNA SPRITE (F121)</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNESOJRTZZR/\">4DNESOJRTZZR</a></td>\n    <td style=\"text-align:left; padding:10px\">14 PE fastq files</td>\n    <td style=\"text-align:left; padding:10px\">1 combined cluster file</td>\n    <td style=\"text-align:left; padding:10px\">1 mcool pairwise contact matrix<br>(2-10 read clusters)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Mouse RNA-DNA SPRITE (pSM33 mESCs)</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNESAXNFKMM/\">4DNESAXNFKMM</a></td>\n    <td style=\"text-align:left; padding:10px\">4 PE fastq files</td>\n    <td style=\"text-align:left; padding:10px\">Not yet available</td>\n    <td style=\"text-align:left; padding:10px\">Not yet available</td>\n  </tr>\n</table>\n<br>\n<br>\n<br>", "display_title": "Summary of Genomics Experiments - SPRITE", "title": "Summary of Genomics Experiments - SPRITE", "status": "released", "@id": "/static-sections/2a4b8872-6318-4ef4-bac4-75ea305db0d3/", "filetype": "html", "contributing_labs": [{"@type": ["Lab", "Item"], "@id": "/labs/mitchell-guttman-lab/", "display_title": "Mitchell Guttman, CALTECH", "uuid": "c17e88b5-912a-496a-acc7-28dd71215a7d", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.c17e88b5-912a-496a-acc7-28dd71215a7d"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "userid.e2324f87-0625-4bbc-803b-d47677aebe08"]}}, "location": "tab:experiment_summaries"}, {"content": {"name": "quinodozetal-table1", "@type": ["StaticSection", "UserContent", "Item"], "award": {"display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@id": "/awards/1U01CA200059-01/", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "options": {"filetype": "html", "collapsible": false, "default_open": true}, "lab": {"@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "uuid": "01cb0c75-5355-42b8-8b6f-4578aadc857c", "content": "All experiments performed in F121 mESCs.<br><br>\n\n<style>\ntable, th, td {\n    border: 1px solid #ddd;\n}\n</style>\n\n<table style=\"width:100%\">\n  <thead>\n    <tr>\n      <th style=\"text-align:left; padding:10px\">Purpose</th>\n      <th align=\"center\">Accession</th>\n      <th>ch00</th>\n      <th>ch01</th>\n      <th>ch02</th>\n      <th>ch03</th>\n      <th>Files</th>\n    </tr>\n  </thead>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr4 Active region to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEX48VBGLZ/\">4DNEX48VBGLZ</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>149075743-149626036</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">55 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr4 Active region to Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXWLT4QRG/\">4DNEXWLT4QRG</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>149075743-149626036</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">41 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr4 Control region to Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXC9ULUK1/\">4DNEXC9ULUK1</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>90905971-92332751</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">40 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr18 NOR to Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXNDIAZIG/\">4DNEXNDIAZIG</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 18:<br>3004000-5000150</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">27 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr18 Control region<br>to Nucleolus and Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXAY765BO/\">4DNEXAY765BO</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 18:<br>34840336-36830032</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td style=\"text-align:left; padding:10px\">49 Microscopy Files (.r3d)<br>2 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances between Chr2 and Chr4 Active regions</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXDPOT9I1/\">4DNEXDPOT9I1</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>149075743-149626036</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">24 Microscopy Files (.r3d)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances between Chr2 Active and Chr4 Control regions</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXLRNSNES/\">4DNEXLRNSNES</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>90905971-92332751</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">40 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr2 Active or Chr4 Active regions<br>to each other or to Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEX76Z42QY/\">4DNEX76Z42QY</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>149075743-149626036</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td style=\"text-align:left; padding:10px\">38 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr2 Active and Chr4 Control regions<br>to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXIJ5C12Z/\">4DNEXIJ5C12Z</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 4:<br>90905971-92332751</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">32 Microscopy Files (.r3d)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances between Chr2 and Chr11 Active regions</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXTKUDA2L/\">4DNEXTKUDA2L</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 11:<br>117138538-118138747</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">43 Microscopy Files (.r3d)<br>1 Processed File (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr2 and Chr11 Active regions<br>to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXBG6G3JV/\">4DNEXBG6G3JV</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 11:<br>117138538-118138747</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 2:<br>29844332-30444626</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">14 Microscopy Files (.r3d)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr11 Control and Chr11 Active regions<br>to each other or to Nuclear Speckle</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXV4YS9V2/\">4DNEXV4YS9V2</a></td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 11:<br>37358350-38186645</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 11:<br>117138538-118138747</td>\n    <td style=\"text-align:left; padding:10px\">SC35</td>\n    <td>  </td>\n    <td style=\"text-align:left; padding:10px\">40 Microscopy Files (.r3d)<br>2 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr3 Control and Chr15 NOR<br>to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXQA2H161/\">4DNEXQA2H161</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 3:<br>153337160-154337181</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 15:<br>4050417-6048847</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">43 Microscopy Files (.r3d)<br>3 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr3 Control and Chr19 NOR<br>to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXQU8JY49/\">4DNEXQU8JY49</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 3:<br>153337160-154337181</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 19:<br>17928145-19921671</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">24 Microscopy Files (.r3d)<br>3 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr12 and Chr15 NORs<br>to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXCVG3PNX/\">4DNEXCVG3PNX</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 12:<br>5993048-6993343</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 15:<br>4050417-6048847</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">47 Microscopy Files (.r3d)<br>3 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr12 and Chr19 NORs to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXD5YH1G8/\">4DNEXD5YH1G8</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 12:<br>5993048-6993343</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 19:<br>17928145-19921671</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">46 Microscopy Files (.r3d)<br>3 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr15 and Chr18 NORs to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXSQP6CIC/\">4DNEXSQP6CIC</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 18:<br>3004000-5000150</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 15:<br>4050417-6048847</td>\n    <td style=\"text-align:left; padding:10px\">Nucleolin</td>\n    <td style=\"text-align:left; padding:10px\">26 Microscopy Files (.r3d)<br>3 Processed Files (.csv)</td>\n  </tr>\n  <tr>\n    <td style=\"text-align:left; padding:10px\">Distances of Chr18 and Chr19 NORs to each other or to Nucleolus</td>\n    <td style=\"text-align:left; padding:10px\"><a href=\"https://data.4dnucleome.org/experiments/4DNEXXJ7W8EQ/\">4DNEXXJ7W8EQ</a></td>\n    <td style=\"text-align:left; padding:10px\">DAPI</td>\n    <td style=\"text-align:left; padding:10px\">GRCm38: 18:<br>3004000-5000150</td>\n    <td style=\"text-align:left; 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