Included Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
2 Common Properties
Experiment Category
Sequencing
Set Type
Replicate
141 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
ChIP-seq
F121-9-CASTx129 (Tier 2)
ChIP-seq time course of EpiLC differentiation
confluent mESCs
Target
H3K27ac (mouse)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
15 syn non-boundary CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn non-boundary CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-H3K4me3
Target
H3K4me3
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-H3K27ac
Target
H3K27ac (mouse)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
4 CBS (4 CTCF binding site region between Sox2 and SE) - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-H3K27ac
Target
H3K27ac (mouse)
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags
ChIP-seq on tagged Sox2 cells
Control line - anti-H3K4me3
Target
H3K4me3
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - input
Target
None (Control)
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - anti-CTCF
Target
Ctcf mouse protein
ChIP-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
ChIP-seq on tagged Sox2 cells
6 syn CTCF sites - anti-Rad21
Target
Rad21 mouse protein
ChIP-seq
G1E-ER4 with mCherry-MD
ChIP-seq on G1E-ER4
PolII - late G1
Target
Polr2a mouse protein
ChIP-seq
G1E-ER4 with mCherry-MD
ChIP-seq on G1E-ER4
PolII - mid-G1
Target
Polr2a mouse protein
ChIP-seq
G1E-ER4 with mCherry-MD
ChIP-seq on G1E-ER4
PolII - early G1
Target
Polr2a mouse protein
ChIP-seq
G1E-ER4 with mCherry-MD
ChIP-seq on G1E-ER4
PolII - anaphase/telophase
Target
Polr2a mouse protein
ChIP-seq
G1E-ER4 with mCherry-MD
ChIP-seq on G1E-ER4
PolII - prometaphase
Target
Polr2a mouse protein