Included Properties
Data Type
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Assay Details
Status
Commendations
Warnings
6 Common Properties
Project
4DN
Lab
Bing Ren, UCSD
Experiment Category
Sequencing
Treatments
No value
Center
NOFIC - Ren
Set Type
Replicate
18 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
4CBS Downstream Control - 4 CTCF binding site region after Sox2 and SE
Target
H3K4me3
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
2CBS Downstream Control - 2 CTCF binding site region after Sox2 and SE
Target
H3K4me3
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
4CBS - 4 CTCF binding site region between Sox2 and SE
Target
H3K4me3
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
2CBS - 2 CTCF binding site region between Sox2 and SE
Target
H3K4me3
PLAC-seq
F123-CASTx129 with Sox2 tags
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
No insertion Control
Target
H3K4me3
PLAC-seq
WTC-11 AAVS1-GFP C28
H3K4me3 PLAC-seq on WTC-11 with GFP tagged AAVS1
clone 28
Target
H3K4me3
PLAC-seq
WTC-11 AAVS1-GFP C6
H3K4me3 PLAC-seq on WTC-11 with GFP tagged AAVS1
clone 6
Target
H3K4me3
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.3% SDS in 1xNEB2, 42ºC, 10'+ short nuclei prep
Target
H3K27ac
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.3% SDS in 1xNEB2, 42ºC, 10'+ long nuclei prep
Target
H3K27ac
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.5% SDS in H2O, 62ºC, 10' + long nuclei prep
Target
H3K27ac
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.3% SDS in 1xNEB2, 42ºC, 10'+ short nuclei prep
Target
H3K4me3
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.3% SDS in 1xNEB2, 42ºC, 10'+ long nuclei prep
Target
H3K4me3
PLAC-seq
GM12878 (Tier 1)
low coverage parameterization
0.5% SDS in H2O, 62ºC, 10' + long nuclei prep
Target
H3K4me3
- fin -