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Included Properties

Data Type
  • ExperimentSetReplicate335
    • Project
    Lab
    Experiment Type
  • Hi-C
  • in situ Hi-C335
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
    Center
    Status
  • Released335
    • Commendations
    Warnings
    2 Common Properties
     Experiment Category
    Sequencing
     Set Type
    Replicate
    335 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESDMEWQ5L
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    inactivated SARS-Cov2 infected serum - 12.5h
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESLR2VW13
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    mock serum
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNES56BC5T7
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    SARS-Cov2 infected - 10 dpi
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNES1KFWYJV
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    SARS-Cov2 infected - 1 dpi
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNES1JP4KZ1
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
    Hi-C on HCT116
    WAPL KD
    Enzyme
    Arima - A1, A2
    Jennifer Cremins, UPENN
    4DNESNSTBMBY
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
    Hi-C on HCT116
    wild-type
    Enzyme
    Arima - A1, A2
    Jennifer Cremins, UPENN
    4DNES4AABNEZ
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    RNaseA
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNES65I3RQG
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    Flavopiridol
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNES2253IBO
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    Ammonium acetate
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNESFSCP5L8
    in situ Hi-C
    H1-hESC (Tier 1)
    Hi-C on H1 cells
    No treatment control
    Enzyme
    Arima - A1, A2
    Sheng Zhong, UCSD
    4DNES265ETYQ
    in situ Hi-C
    Sertoli cell
    Hi-C on mouse somatic gonadal cells
    male Sertoli cells
    Enzyme
    Arima - A1, A2
    David Zarkower, UMN
    4DNESSS7VU57
    in situ Hi-C
    granulosa cell
    Hi-C on mouse somatic gonadal cells
    female granulosa cells
    Enzyme
    Arima - A1, A2
    David Zarkower, UMN
    4DNESX6M2BHM
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    SARS-Cov2 infected - 3dpi
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESL66QDQF
    in situ Hi-C
    olfactory receptor cell
    Hi-C on hamster OSNs
    control
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESIQLICOJ
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    SARS-Cov2 infected
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESPP6Q1WL
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    SARS-Cov2 infected
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESQ9ZWU97
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    SARS-Cov2 infected
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESZJM7OXF
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    SARS-Cov2 infected
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESOK2M9XC
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    control
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESKRDKZ3P
    in situ Hi-C
    olfactory receptor cell
    Hi-C on human OSNs
    control
    Enzyme
    MseI
    Stavros Lomvardas, COLUMBIA
    4DNESCTYU1WN
    in situ Hi-C
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Hi-C on Sox2 tagged F123 cells
    4 CTCF site region between Sox2 and SE
    Enzyme
    MboI
    Bing Ren, UCSD
    4DNES2Y6YG9E
    in situ Hi-C
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Hi-C on Sox2 tagged F123 cells
    2 CTCF site region between Sox2 and SE
    Enzyme
    MboI
    Bing Ren, UCSD
    4DNESYTUBW2E
    in situ Hi-C
    H1-hESC
    Hi-C on H1 cells - protocol variations
    Enzyme HindIII - in situ Hi-C on cells cultured prior to 4DN SOP
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESU36SE4V
    in situ Hi-C
    HFF-hTERT
    Hi-C on HFF cells - protocol variations
    Formaldehyde, DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESQSPD7TW
    in situ Hi-C
    HFF-hTERT
    Hi-C on HFF cells - protocol variations
    Formaldehyde, DdeI
    Enzyme
    DdeI
    Job Dekker, UMMS